Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sotASimilar to Erwinia chrysanthemi sugar efflux transporter A SotA SWALL:SOTA_ERWCH (SWALL:Q9S3K0) (393 aa) fasta scores: E(): 3.9e-125, 80.72% id in 389 aa, and to Escherichia coli sugar efflux transporter B SetB or b2170 SWALL:SETB_ECOLI (SWALL:P33026) (393 aa) fasta scores: E(): 2.7e-116, 71.97% id in 389 aa. (392 aa)    
Predicted Functional Partners:
ompN
Similar to Escherichia coli outer membrane protein N precursor OmpN or b1377 SWALL:OMPN_ECOLI (SWALL:P77747) (377 aa) fasta scores: E(): 1.1e-76, 53.86% id in 388 aa.
  
   
 0.621
ECA2203
Similar to Yersinia pestis putative exported protein ypo2305 or y2136 SWALL:Q8ZE77 (EMBL:AJ414151) (317 aa) fasta scores: E(): 2.4e-78, 69.9% id in 319 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1625 SWALL:AAN43208 (EMBL:AE015183) (314 aa) fasta scores: E(): 8.2e-74, 67.82% id in 317 aa.
  
     0.597
ilvG
Similar to Escherichia coli acetolactate synthase isozyme II large subunit IlvG or b3767 SWALL:ILVG_ECOLI (SWALL:P00892) (548 aa) fasta scores: E(): 9.5e-169, 80.22% id in 546 aa.
   
 
 0.544
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
      
 0.534
damX
DamX protein; Non-essential cell division protein.
  
   
 0.531
rfbU
Putative glycosyl transferase; Similar to Salmonella typhimurium RfbU protein RfbU or stm2086 SWALL:RFBU_SALTY (SWALL:P26402) (353 aa) fasta scores: E(): 2.8e-40, 45.65% id in 357 aa, and to Salmonella typhi putative glycosyltransferase RfbU or sty2295 SWALL:Q8Z5I8 (EMBL:AL627273) (353 aa) fasta scores: E(): 2.8e-40, 45.93% id in 357 aa.
      
 0.530
secB
Protein-export protein; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
      
 0.525
ECA0648
Similar to Yersinia pestis putative membrane protein ypo0582 or y3597 SWALL:AAM87145 (EMBL:AJ414143) (176 aa) fasta scores: E(): 3.4e-49, 73.86% id in 176 aa, and to Escherichia coli hypothetical protein ygjv ygjv or b3090 SWALL:YGJV_ECOLI (SWALL:P42603) (183 aa) fasta scores: E(): 1.2e-47, 67.81% id in 174 aa.
  
   
 0.516
fruB
Similar to Escherichia coli, and Escherichia coli O157:H7 PTS system, fructose-specific IIa/Fpr component FruB or FruF or Fpr or b2169 or z3427 or ecs3061 SWALL:PTFA_ECOLI (SWALL:P24217) (376 aa) fasta scores: E(): 5.9e-97, 69.41% id in 376 aa.
 
   
 0.508
cueR
Copper efflux regulator; Similar to Escherichia coli, and Shigella flexneri transcriptional regulator CueR or b0487 or sf0432 SWALL:CUER_ECOLI (SWALL:P77565) (135 aa) fasta scores: E(): 8.4e-34, 72.51% id in 131 aa.
      
 0.488
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.