STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sprLipoprotein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri lipoprotein Spr precursor Spr or b2175 or c2712 or z3434 or ecs3067 or sf2262 SWALL:SPR_ECOLI (SWALL:P77685) (188 aa) fasta scores: E(): 2.5e-50, 71.05% id in 190 aa. (193 aa)    
Predicted Functional Partners:
nlpI
Lipoprotein; May be involved in cell division.
    
 
 0.836
prc
Similar to Escherichia coli tail-specific protease precursor Prc or Tsp or b1830 SWALL:PRC_ECOLI (SWALL:P23865) (682 aa) fasta scores: E(): 1.6e-204, 80.47% id in 671 aa; Belongs to the peptidase S41A family.
    
 
 0.836
ECA2732
Putative elongation factor; Similar to Salmonella typhimurium putative elongation factor yeip or stm2211 SWALL:Q8ZNK3 (EMBL:AE008798) (267 aa) fasta scores: E(): 5.2e-62, 84.21% id in 190 aa, and to Escherichia coli O157:H7 putative elongation factor yeip or z3430 or ecs3063 SWALL:Q8XE90 (EMBL:AE005449) (275 aa) fasta scores: E(): 5.3e-62, 84.73% id in 190 aa.
    0.699
ECA2733
Conserved hypothetical protein; Similar to Yersinia pestis putative cobalamin synthesis protein ypo1277 or y2906 SWALL:AAM86457 (EMBL:AJ414147) (327 aa) fasta scores: E(): 9.2e-90, 70.6% id in 330 aa, and to Salmonella typhimurium, and Salmonella typhi putative cobalamin synthesis protein yeir or stm2212 or sty2448 SWALL:Q8XFI7 (EMBL:AE008799) (328 aa) fasta scores: E(): 9.7e-83, 66.26% id in 329 aa.
      0.643
ftsX
Cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.571
ECA2483
Putative peptidase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical metalloprotease yeba precursor yeba or b1856 or c2270 or sf1866 SWALL:YEBA_ECOLI (SWALL:P24204) (440 aa) fasta scores: E(): 6.7e-128, 75.11% id in 442 aa, and to Salmonella typhimurium putative peptidase yeba or stm1890 SWALL:Q8ZNV9 (EMBL:AE008784) (439 aa) fasta scores: E(): 5.8e-128, 75.05% id in 441 aa.
 
  
 0.521
ECA2736
Similar to Yersinia pestis putative substrate-binding transport protein ypo1273 or y2910 SWALL:Q8ZGL6 (EMBL:AJ414147) (602 aa) fasta scores: E(): 1.5e-180, 69.6% id in 602 aa, and to Salmonella typhi putative transport system periplasmic binding protein sty2452 SWALL:Q8Z585 (EMBL:AL627273) (601 aa) fasta scores: E(): 4.8e-162, 62.29% id in 602 aa.
 
      0.481
lpxT
Putative membrane-bound phosphatase; Involved in the modification of the lipid A domain of lipopolysaccharides (LPS). Transfers a phosphate group from undecaprenyl pyrophosphate (C55-PP) to lipid A to form lipid A 1- diphosphate. Contributes to the recycling of undecaprenyl phosphate (C55-P); Belongs to the LpxT phosphotransferase family.
 
    0.478
zapB
Conserved hypothetical protein; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
     0.437
dsbA
Similar to Erwinia carotovora thiol:disulfide interchange protein DsbA precursor SWALL:DSBA_ERWCA (SWALL:Q9RB10) (207 aa) fasta scores: E(): 1.2e-76, 98.55% id in 207 aa.
  
    0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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