STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2736Similar to Yersinia pestis putative substrate-binding transport protein ypo1273 or y2910 SWALL:Q8ZGL6 (EMBL:AJ414147) (602 aa) fasta scores: E(): 1.5e-180, 69.6% id in 602 aa, and to Salmonella typhi putative transport system periplasmic binding protein sty2452 SWALL:Q8Z585 (EMBL:AL627273) (601 aa) fasta scores: E(): 4.8e-162, 62.29% id in 602 aa. (602 aa)    
Predicted Functional Partners:
ECA2737
Similar to Yersinia pestis putative ABC transporter integral membrane subunit ypo1272 or y2911 SWALL:AAM86462 (EMBL:AJ414147) (366 aa) fasta scores: E(): 6.5e-118, 83.92% id in 367 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter permease protein yejb yejb or b2178 or z3437 or ecs3070 SWALL:YEJB_ECOLI (SWALL:P33914) (364 aa) fasta scores: E(): 6.4e-113, 81.09% id in 365 aa.
 
  
 0.956
ECA2738
Putative ABC transporter, permease protein; Similar to Yersinia pestis putative ABC transporter integral membrane subunit ypo1271 or y2912 SWALL:AAM86463 (EMBL:AJ414147) (342 aa) fasta scores: E(): 3.5e-106, 76.83% id in 341 aa, and to Escherichia coli hypothetical ABC transporter permease protein yeje or b2179 SWALL:YEJE_ECOLI (SWALL:P33915) (341 aa) fasta scores: E(): 6.2e-105, 75.58% id in 340 aa.
 
  
 0.955
ECA2739
Similar to Yersinia pestis putative ABC transporter ATP-binding subunit ypo1270 SWALL:Q8ZGL9 (EMBL:AJ414147) (530 aa) fasta scores: E(): 1.2e-144, 74.85% id in 529 aa, and to Salmonella typhi putative ABC-transporter ATP-binding protein sty2455 SWALL:Q8Z583 (EMBL:AL627273) (529 aa) fasta scores: E(): 8.4e-139, 72.15% id in 528 aa.
 
  
  0.933
ECA1548
Similar to Streptomyces coelicolor putative transport system permease protein sco6645 or sc4g2.19 SWALL:O86691 (EMBL:AL939128) (601 aa) fasta scores: E(): 9.4e-94, 50.35% id in 562 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein nikb or atu1198 or agr_c_2209 SWALL:Q8UG44 (EMBL:AE009082) (314 aa) fasta scores: E(): 3.6e-20, 31.33% id in 300 aa.
  
 0.885
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
  
    0.701
ECA2733
Conserved hypothetical protein; Similar to Yersinia pestis putative cobalamin synthesis protein ypo1277 or y2906 SWALL:AAM86457 (EMBL:AJ414147) (327 aa) fasta scores: E(): 9.2e-90, 70.6% id in 330 aa, and to Salmonella typhimurium, and Salmonella typhi putative cobalamin synthesis protein yeir or stm2212 or sty2448 SWALL:Q8XFI7 (EMBL:AE008799) (328 aa) fasta scores: E(): 9.7e-83, 66.26% id in 329 aa.
 
     0.652
ECA2732
Putative elongation factor; Similar to Salmonella typhimurium putative elongation factor yeip or stm2211 SWALL:Q8ZNK3 (EMBL:AE008798) (267 aa) fasta scores: E(): 5.2e-62, 84.21% id in 190 aa, and to Escherichia coli O157:H7 putative elongation factor yeip or z3430 or ecs3063 SWALL:Q8XE90 (EMBL:AE005449) (275 aa) fasta scores: E(): 5.3e-62, 84.73% id in 190 aa.
 
      0.639
spr
Lipoprotein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri lipoprotein Spr precursor Spr or b2175 or c2712 or z3434 or ecs3067 or sf2262 SWALL:SPR_ECOLI (SWALL:P77685) (188 aa) fasta scores: E(): 2.5e-50, 71.05% id in 190 aa.
 
      0.481
ECA1005
Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein DfpD or atu6074 or agr_pti_146 SWALL:Q8U661 (EMBL:AE009426) (556 aa) fasta scores: E(): 1.7e-107, 54.13% id in 556 aa, and to Rhizobium meliloti putative peptide transport system ATP-binding ABC transporter protein r03119 or smc03268 SWALL:Q92LE6 (EMBL:AL591793) (625 aa) fasta scores: E(): 1.3e-93, 48.5% id in 567 aa.
 
  0.465
ECA0445
Similar to Bradyrhizobium japonicum ABC transporter ATP-binding protein blr1604 SWALL:BAC46869 (EMBL:AP005940) (626 aa) fasta scores: E(): 4.6e-90, 49.21% id in 573 aa, and to Agrobacterium tumefaciens MoaD SWALL:O50270 (EMBL:AF242881) (588 aa) fasta scores: E(): 2.2e-61, 39.78% id in 553 aa.
 
  0.464
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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