STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2737Similar to Yersinia pestis putative ABC transporter integral membrane subunit ypo1272 or y2911 SWALL:AAM86462 (EMBL:AJ414147) (366 aa) fasta scores: E(): 6.5e-118, 83.92% id in 367 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter permease protein yejb yejb or b2178 or z3437 or ecs3070 SWALL:YEJB_ECOLI (SWALL:P33914) (364 aa) fasta scores: E(): 6.4e-113, 81.09% id in 365 aa. (365 aa)    
Predicted Functional Partners:
ECA2738
Putative ABC transporter, permease protein; Similar to Yersinia pestis putative ABC transporter integral membrane subunit ypo1271 or y2912 SWALL:AAM86463 (EMBL:AJ414147) (342 aa) fasta scores: E(): 3.5e-106, 76.83% id in 341 aa, and to Escherichia coli hypothetical ABC transporter permease protein yeje or b2179 SWALL:YEJE_ECOLI (SWALL:P33915) (341 aa) fasta scores: E(): 6.2e-105, 75.58% id in 340 aa.
 
  
 0.980
ECA2736
Similar to Yersinia pestis putative substrate-binding transport protein ypo1273 or y2910 SWALL:Q8ZGL6 (EMBL:AJ414147) (602 aa) fasta scores: E(): 1.5e-180, 69.6% id in 602 aa, and to Salmonella typhi putative transport system periplasmic binding protein sty2452 SWALL:Q8Z585 (EMBL:AL627273) (601 aa) fasta scores: E(): 4.8e-162, 62.29% id in 602 aa.
 
   
 0.948
ECA2739
Similar to Yersinia pestis putative ABC transporter ATP-binding subunit ypo1270 SWALL:Q8ZGL9 (EMBL:AJ414147) (530 aa) fasta scores: E(): 1.2e-144, 74.85% id in 529 aa, and to Salmonella typhi putative ABC-transporter ATP-binding protein sty2455 SWALL:Q8Z583 (EMBL:AL627273) (529 aa) fasta scores: E(): 8.4e-139, 72.15% id in 528 aa.
 
     0.946
ECA1005
Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein DfpD or atu6074 or agr_pti_146 SWALL:Q8U661 (EMBL:AE009426) (556 aa) fasta scores: E(): 1.7e-107, 54.13% id in 556 aa, and to Rhizobium meliloti putative peptide transport system ATP-binding ABC transporter protein r03119 or smc03268 SWALL:Q92LE6 (EMBL:AL591793) (625 aa) fasta scores: E(): 1.3e-93, 48.5% id in 567 aa.
 
     0.525
ECA0445
Similar to Bradyrhizobium japonicum ABC transporter ATP-binding protein blr1604 SWALL:BAC46869 (EMBL:AP005940) (626 aa) fasta scores: E(): 4.6e-90, 49.21% id in 573 aa, and to Agrobacterium tumefaciens MoaD SWALL:O50270 (EMBL:AF242881) (588 aa) fasta scores: E(): 2.2e-61, 39.78% id in 553 aa.
 
     0.504
ECA4421
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 2.7e-36, 40.14% id in 274 aa, and to Ralstonia solanacearum probable dipeptide transmembrane ABC transporter protein DppC2 or rsc1883 or rs03443 SWALL:Q8XY80 (EMBL:AL646067) (311 aa) fasta scores: E(): 4.2e-68, 61.75% id in 285 aa.
     0.498
ECA0072
Similar to Corynebacterium glutamicum ABC-type transporter, duplicated ATPase component cgl2436 SWALL:Q8NMX7 (EMBL:AP005281) (547 aa) fasta scores: E(): 8.2e-93, 54.2% id in 535 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YejF SWALL:YEJF_ECOLI (SWALL:P33916) (529 aa) fasta scores: E(): 4.8e-65, 42.8% id in 528 aa.
 
     0.473
ECA0138
ABC transporter ATP-binding protein; Similar to Salmonella typhimurium putative ATPase components of ABC-type transport system, containing duplicated atpase domain YliA SWALL:Q8ZQM4 (EMBL:AE008735) (623 aa) fasta scores: E(): 1.3e-118, 57% id in 607 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YliA SWALL:YLIA_ECOLI (SWALL:P75796) (629 aa) fasta scores: E(): 5.6e-117, 55.66% id in 609 aa.
 
     0.472
ECA1006
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3435 or agr_l_2782 SWALL:Q8UAD9 (EMBL:AE009274) (341 aa) fasta scores: E(): 2.7e-69, 61.92% id in 302 aa, and to Rhizobium meliloti probable ABC transporter, permease protein ra1137 or sma2083 SWALL:Q92XV3 (EMBL:AE007299) (332 aa) fasta scores: E(): 5.3e-66, 65.92% id in 270 aa.
     0.465
ECA4420
Similar to Rhizobium loti ABC transporter ATP-binding protein mlr6287 SWALL:Q989T5 (EMBL:AP003008) (616 aa) fasta scores: E(): 1e-141, 65.67% id in 603 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein MoaD or atu4723 or agr_l_318 SWALL:Q8U6T3 (EMBL:AE009400) (642 aa) fasta scores: E(): 9.6e-143, 64.59% id in 610 aa.
 
     0.462
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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