STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2743Similar to Escherichia coli hypothetical protein yech or b1906 SWALL:YECH_ECOLI (SWALL:P46887) (79 aa) fasta scores: E(): 5.8e-18, 62.02% id in 79 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yech or stm1936 or sty2144 SWALL:Q8XGI3 (EMBL:AE008786) (79 aa) fasta scores: E(): 1.1e-16, 59.49% id in 79 aa. (79 aa)    
Predicted Functional Partners:
ECA2744
Putative helicase; Similar to Yersinia pestis putative dead box helicase family protein ypo1265 or y2919 SWALL:AAM86469 (EMBL:AJ414147) (585 aa) fasta scores: E(): 6.6e-185, 80.3% id in 584 aa, and to Salmonella typhimurium, and Salmonella typhi putative ATP-dependent helicase yejh or stm2223 or sty2460 SWALL:Q8XGB8 (EMBL:AE008799) (586 aa) fasta scores: E(): 2.5e-180, 77.81% id in 586 aa.
 
     0.850
asoB
Probable transport protein; Similar to Aeromonas salmonicida AsoB protein AsoB SWALL:Q44255 (EMBL:L47259) (426 aa) fasta scores: E(): 1.4e-79, 53.58% id in 405 aa, and to Yersinia pestis putative permease AsoB or ypo0655 SWALL:Q8ZI59 (EMBL:AJ414144) (416 aa) fasta scores: E(): 5e-126, 76.94% id in 412 aa.
  
     0.713
ECA1474
Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein year or b1797 or z2839 or ecs2506 SWALL:YEAR_ECOLI (SWALL:P76248) (119 aa) fasta scores: E(): 3.1e-30, 66.66% id in 105 aa, and to Salmonella typhi hypothetical protein Sty1850 SWALL:Q8Z6D6 (EMBL:AL627271) (120 aa) fasta scores: E(): 5.8e-30, 65.71% id in 105 aa.
  
     0.711
hybE
Hydrogenase-2 component protein; Similar to Escherichia coli, and Escherichia coli O6 hydrogenase-2 operon protein HybE or b2992 or c3729 SWALL:HYBE_ECOLI (SWALL:P37183) (162 aa) fasta scores: E(): 1.3e-27, 48.05% id in 154 aa.
  
     0.610
hybB
Similar to Escherichia coli probable Ni/Fe-hydrogenase 2 B-type cytochrome subunit hybb or b2995 SWALL:HYBB_ECOLI (SWALL:P37180) (392 aa) fasta scores: E(): 8.4e-123, 73.69% id in 384 aa.
  
     0.573
nrfB
Cytochrome C-type protein; Similar to Escherichia coli, and Escherichia coli O6 cytochrome C-type protein NrfB precursor NrfB or b4071 or c5067 SWALL:NRFB_ECOLI (SWALL:P32707) (188 aa) fasta scores: E(): 9e-56, 74.21% id in 190 aa.
  
     0.513
ECA0018
Conserved hypothetical protein; Similar to Pectobacterium carotovorum subsp. carotovorum YihD SWALL:Q9RB12 (EMBL:AF146615) (89 aa) fasta scores: E(): 6.6e-33, 98.87% id in 89 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein YihD SWALL:YIHD_ECOLI (SWALL:P32126) (89 aa) fasta scores: E(): 1.8e-26, 80.89% id in 89 aa.
  
     0.512
rsuA
Ribosomal small subunit pseudouridine synthase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribosomal small subunit pseudouridine synthase A RsuA or b2183 or c2720 or z3442 or ecs3075 or sf2270 SWALL:RSUA_ECOLI (SWALL:P33918) (231 aa) fasta scores: E(): 5.3e-75, 78.26% id in 230 aa; ribosomal small subunit pseudouridine synthase a.
       0.483
ECA1814
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein ycfp or stm1210 or sty1250 SWALL:Q8XGQ0 (EMBL:AE008752) (180 aa) fasta scores: E(): 8.5e-62, 82.77% id in 180 aa, and to Yersinia pestis hypothetical protein ypo1616 or y1776 SWALL:AAM85344 (EMBL:AJ414149) (180 aa) fasta scores: E(): 3.8e-61, 81.11% id in 180 aa; Belongs to the UPF0227 family.
  
     0.480
ECA2287
Conserved hypothetical protein; Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein SWALL:AAO69255 (EMBL:AE016839) (83 aa) fasta scores: E(): 3.7e-19, 66.26% id in 83 aa, and to Yersinia pestis hypothetical protein ypo2217 ypo2217 or y2058 SWALL:Q8ZEF6 (EMBL:AJ414151) (83 aa) fasta scores: E(): 5e-19, 71.42% id in 77 aa.
  
     0.456
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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