Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ECA2754Putative prophage primase; Similar to Escherichia coli O157:H7 alpha replication protein of prophage cp-933i z0339 or ecs0303 SWALL:Q8X7I5 (EMBL:AE005204) (796 aa) fasta scores: E(): 1.3e-10, 28.27% id in 633 aa, and to Pasteurella multocida hypothetical protein Pm1782 SWALL:Q9CK52 (EMBL:AE006215) (725 aa) fasta scores: E(): 9.7e-95, 45.25% id in 590 aa, and to Bacteriophage P4 DNA primase SWALL:Q8LTT9 (EMBL:AF509493) (362 aa) fasta scores: E(): 2.3e-41, 47.26% id in 347 aa. (868 aa)    
Predicted Functional Partners:
ECA2753
Putative phage-related protein; Its C-terminal region is similar to Yersinia pestis putative prophage protein ypo1091 or y3086 SWALL:Q8ZH22 (EMBL:AJ414146) (180 aa) fasta scores: E(): 1.7e-06, 52.83% id in 53 aa.
       0.826
ECA2752
Phage-related protein; Similar to Bacteriophage P4 hypothetical 9.7 kDa protein SWALL:Y9K_BPP4 (SWALL:P12552) (88 aa) fasta scores: E(): 0.034, 41.86% id in 43 aa, and to Pseudomonas aeruginosa phage-related protein SWALL:Q8GPP9 (EMBL:AF440524) (72 aa) fasta scores: E(): 0.0038, 31.66% id in 60 aa.
  
  
 0.692
ECA0407
Putative integrase (partial); Similar to Shigella flexneri integrase intB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 5.6e-17, 81.48% id in 54 aa, and to Escherichia coli integrase inT SWALL:Q93SE7 (EMBL:AJ278144) (394 aa) fasta scores: E(): 1.7e-15, 70.9% id in 55 aa.
 
     0.673
ECA2879
Integrase; Similar to Yersinia pestis putative prophage P4 integrase IntB or y0749 SWALL:AAM84336 (EMBL:AE013677) (431 aa) fasta scores: E(): 1.7e-120, 72.53% id in 415 aa, and to Shigella flexneri Int or sf2964 SWALL:AAN44445 (EMBL:AE015309) (420 aa) fasta scores: E(): 3.5e-112, 67.95% id in 415 aa; Belongs to the 'phage' integrase family.
 
     0.663
intB-2
Integrase; Similar to Yersinia pestis integrase IntB or ypo3438 SWALL:Q8ZBH6 (EMBL:AJ414157) (419 aa) fasta scores: E(): 6.6e-96, 56.5% id in 423 aa, and to Shigella flexneri integrase IntB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 3.7e-90, 57.46% id in 402 aa; Belongs to the 'phage' integrase family.
 
     0.658
intB
Phage integrase; Similar to Yersinia pestis integrase IntB or ypo3438 SWALL:Q8ZBH6 (EMBL:AJ414157) (419 aa) fasta scores: E(): 2.4e-97, 58.15% id in 423 aa, and to Shigella flexneri integrase IntB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 2.4e-90, 58.45% id in 402 aa; Belongs to the 'phage' integrase family.
 
     0.657
intA
Similar to Escherichia coli prophage cp4-57 integrase inta or slpa or intx or b2622 SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 1e-90, 58.56% id in 403 aa; Belongs to the 'phage' integrase family.
 
     0.656
ECA3460
Phage integrase; Similar to Escherichia coli O157:H7 integrase protein for prophage CP-933i z0324 or ecs0289 SWALL:Q8X7K7 (EMBL:AE005203) (410 aa) fasta scores: E(): 7.6e-123, 75.3% id in 405 aa, and to Yersinia pestis putative phage integrase ypo4033 or y4052 SWALL:AAM87596 (EMBL:AJ414160) (397 aa) fasta scores: E(): 1.5e-94, 62.67% id in 367 aa; Belongs to the 'phage' integrase family.
 
     0.640
ECA2178
Putative transposase (partial); Low %GC DNA.
 
  
 0.622
ECA2182
Prophage integrase; Similar to Escherichia coli O157:H7 integrase protein for prophage cp-933i z0324 or ecs0289 SWALL:Q8X7K7 (EMBL:AE005203) (410 aa) fasta scores: E(): 6.8e-46, 40.35% id in 337 aa, and to Yersinia pestis integrase int or ypo0887 or y3271 SWALL:AAM86821 (EMBL:AJ414145) (404 aa) fasta scores: E(): 5.8e-48, 41.12% id in 338 aa; Belongs to the 'phage' integrase family.
 
     0.590
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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