Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA2757Similar to Agrobacterium tumefaciens hypothetical protein atu1783 or agr_c_3279 SWALL:Q8UEH4 (EMBL:AE009134) (122 aa) fasta scores: E(): 4e-09, 46.83% id in 79 aa, and to Rhizobium loti hypothetical protein Msr2423 SWALL:Q98IF7 (EMBL:AP002999) (81 aa) fasta scores: E(): 1.1e-08, 45.2% id in 73 aa. (81 aa)    
Predicted Functional Partners:
ECA2758
Similar to Rhizobium sp. hypothetical 11.0 kDa protein Y4kP SWALL:Y4KP_RHISN (SWALL:P55534) (96 aa) fasta scores: E(): 4.6e-10, 43.82% id in 89 aa, and to Agrobacterium tumefaciens hypothetical protein atu1782 or agr_c_3278 SWALL:Q8UEH5 (EMBL:AE009134) (96 aa) fasta scores: E(): 4.5e-09, 42.22% id in 90 aa.
 
 
 0.962
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
     
 0.934
ECA0409
Putative plasmid-related protein; Similar to Escherichia coli O157:H7 plasmid po157 DNA, complete sequence l7011 SWALL:O82928 (EMBL:AB011549) (91 aa) fasta scores: E(): 9.3e-12, 42.85% id in 91 aa, and to Shigella sonnei YacB protein yacB SWALL:Q9Z4G4 (EMBL:AB021078) (93 aa) fasta scores: E(): 0.63, 30% id in 90 aa.
  
 
 0.625
ECA2759
Hypothetical protein; No significant database matches.
       0.625
ECA1466
Conserved hypothetical protein; Similar to Enterobacter aerogenes KluB SWALL:Q93KC5 (EMBL:U67194) (104 aa) fasta scores: E(): 1.4e-21, 58.41% id in 101 aa, and to Pseudomonas sp. hypothetical 11.6 kDa protein orf1 SWALL:Q937D2 (EMBL:U66917) (104 aa) fasta scores: E(): 8.5e-22, 59.4% id in 101 aa.
  
 
 0.587
gcvP
Putative glycine cleavage system P protein (glycine dehydrogenase [decarboxylating]); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.569
putA
Bifunctional PutA protein [includes: proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
  0.551
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
   
  
 0.512
ECA2756
Hypothetical protein; No significant database matches.
       0.431
mvpA
Putative plasmid protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
   0.403
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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