STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2757Similar to Agrobacterium tumefaciens hypothetical protein atu1783 or agr_c_3279 SWALL:Q8UEH4 (EMBL:AE009134) (122 aa) fasta scores: E(): 4e-09, 46.83% id in 79 aa, and to Rhizobium loti hypothetical protein Msr2423 SWALL:Q98IF7 (EMBL:AP002999) (81 aa) fasta scores: E(): 1.1e-08, 45.2% id in 73 aa. (81 aa)    
Predicted Functional Partners:
ECA2758
Similar to Rhizobium sp. hypothetical 11.0 kDa protein Y4kP SWALL:Y4KP_RHISN (SWALL:P55534) (96 aa) fasta scores: E(): 4.6e-10, 43.82% id in 89 aa, and to Agrobacterium tumefaciens hypothetical protein atu1782 or agr_c_3278 SWALL:Q8UEH5 (EMBL:AE009134) (96 aa) fasta scores: E(): 4.5e-09, 42.22% id in 90 aa.
 
 
 0.963
ECA0409
Putative plasmid-related protein; Similar to Escherichia coli O157:H7 plasmid po157 DNA, complete sequence l7011 SWALL:O82928 (EMBL:AB011549) (91 aa) fasta scores: E(): 9.3e-12, 42.85% id in 91 aa, and to Shigella sonnei YacB protein yacB SWALL:Q9Z4G4 (EMBL:AB021078) (93 aa) fasta scores: E(): 0.63, 30% id in 90 aa.
  
 
 0.631
ECA2759
Hypothetical protein; No significant database matches.
       0.625
ECA1466
Conserved hypothetical protein; Similar to Enterobacter aerogenes KluB SWALL:Q93KC5 (EMBL:U67194) (104 aa) fasta scores: E(): 1.4e-21, 58.41% id in 101 aa, and to Pseudomonas sp. hypothetical 11.6 kDa protein orf1 SWALL:Q937D2 (EMBL:U66917) (104 aa) fasta scores: E(): 8.5e-22, 59.4% id in 101 aa.
  
 
 0.590
mvpA
Putative plasmid protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
   0.469
mcK
Putative plasmid-related protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
   0.457
ECA2756
Hypothetical protein; No significant database matches.
       0.431
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.