STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA2760Similar to Ralstonia solanacearum hypothetical protein rsc1958 or rs03532 SWALL:Q8XY05 (EMBL:AL646067) (113 aa) fasta scores: E(): 8.8e-34, 72.56% id in 113 aa, and to Bradyrhizobium japonicum Bll3987 protein Bll3987 SWALL:BAC49252 (EMBL:AP005949) (110 aa) fasta scores: E(): 3.7e-26, 58.18% id in 110 aa. (109 aa)    
Predicted Functional Partners:
ECA2761
Similar to Escherichia coli hypothetical protein ygap or b2668 SWALL:YGAP_ECOLI (SWALL:P55734) (174 aa) fasta scores: E(): 3.5e-33, 57.48% id in 167 aa, and to Salmonella typhi hypothetical protein Sty2918 SWALL:Q8Z4F4 (EMBL:AL627276) (175 aa) fasta scores: E(): 2.9e-30, 52.69% id in 167 aa.
  
    0.633
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.