STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2771Similar to Vibrio cholerae peptidase, putative vc1983 SWALL:Q9KQL5 (EMBL:AE004273) (615 aa) fasta scores: E(): 4.1e-135, 56.13% id in 611 aa, and to Vibrio vulnificus oligoendopeptidase F vv21400 SWALL:AAO08281 (EMBL:AE016813) (615 aa) fasta scores: E(): 1.7e-132, 53.34% id in 613 aa. (622 aa)    
Predicted Functional Partners:
ECA2772
Putative glycosyl transferase; Similar to Escherichia coli hypothetical protein ybib or b0800 SWALL:YBIB_ECOLI (SWALL:P30177) (320 aa) fasta scores: E(): 8.8e-82, 63.95% id in 319 aa, and to Yersinia pestis putative glycosyl transferase ypo2522 or y1665 SWALL:Q8ZDN8 (EMBL:AJ414152) (319 aa) fasta scores: E(): 3.3e-79, 66.03% id in 318 aa.
  
    0.586
ECA2773
Bacteriophage tail sheath protein (partial); Similar to the N-terminal regions of many including Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa, and to Pectobacterium carotovorum subsp. carotovorum tail sheath protein SWALL:Q9KW62 (EMBL:AB045036) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa.
       0.546
ECA2774
Conserved hypothetical protein; Similar to Salmonella typhimurium putative cytoplasmic protein stm4214 SWALL:Q8ZKJ1 (EMBL:AE008897) (65 aa) fasta scores: E(): 2.6e-10, 54.68% id in 64 aa, and to Salmonella typhi hypothetical protein Sty1624 SWALL:Q8Z6U2 (EMBL:AL627270) (84 aa) fasta scores: E(): 6.4e-10, 64.58% id in 48 aa.
       0.546
ECA2775
Similar to Salmonella typhi hypothetical protein Sty1623 SWALL:Q8Z6U3 (EMBL:AL627270) (154 aa) fasta scores: E(): 3e-18, 41.09% id in 146 aa, and to Salmonella typhimurium putative cytoplasmic protein stm4215 SWALL:Q8ZKJ0 (EMBL:AE008897) (151 aa) fasta scores: E(): 8.9e-12, 43.24% id in 111 aa.
       0.546
ECA0389
Putative hydrolase; Similar to Bradyrhizobium japonicum protein blr6677 SWALL:BAC51942 (EMBL:AP005959) (353 aa) fasta scores: E(): 9.7e-77, 55.45% id in 339 aa, and to Caulobacter crescentus hydrolase, alpha/beta hydrolase fold family cc3204 SWALL:Q9A3K0 (EMBL:AE005984) (358 aa) fasta scores: E(): 1.5e-48, 44.41% id in 331 aa. Note that there are no significant database matches to enterobacterial species.
   
    0.527
ribD
Riboflavin biosynthesis protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.478
araF
Similar to Escherichia coli L-arabinose-binding periplasmic protein precursor AraF or b1901 SWALL:ARAF_ECOLI (SWALL:P02924) (329 aa) fasta scores: E(): 1.4e-107, 89.87% id in 326 aa.
  
     0.445
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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