STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2772Putative glycosyl transferase; Similar to Escherichia coli hypothetical protein ybib or b0800 SWALL:YBIB_ECOLI (SWALL:P30177) (320 aa) fasta scores: E(): 8.8e-82, 63.95% id in 319 aa, and to Yersinia pestis putative glycosyl transferase ypo2522 or y1665 SWALL:Q8ZDN8 (EMBL:AJ414152) (319 aa) fasta scores: E(): 3.3e-79, 66.03% id in 318 aa. (322 aa)    
Predicted Functional Partners:
ehpC
Putative phenazine antibiotic biosynthesis protein; Similar to Pseudomonas aeruginosa PhzE and pa4214 SWALL:O33410 (EMBL:AF005404) (627 aa) fasta scores: E(): 1.2e-105, 45.65% id in 622 aa, and to Pantoea agglomerans EhpC SWALL:AAN40892 (EMBL:AF451953) (634 aa) fasta scores: E(): 6.8e-55, 37.82% id in 624 aa.
  
 
 0.971
trpE
Similar to Escherichia coli anthranilate synthase component I TrpE or b1264 SWALL:TRPE_ECOLI (SWALL:P00895) (520 aa) fasta scores: E(): 2.8e-154, 77.5% id in 520 aa.
 
 
 0.809
pabB
Similar to Escherichia coli para-aminobenzoate synthase component I PabB or b1812 SWALL:PABB_ECOLI (SWALL:P05041) (453 aa) fasta scores: E(): 6.5e-119, 66.51% id in 433 aa.
 
 
 0.788
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
 
  
 0.776
ECA2773
Bacteriophage tail sheath protein (partial); Similar to the N-terminal regions of many including Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa, and to Pectobacterium carotovorum subsp. carotovorum tail sheath protein SWALL:Q9KW62 (EMBL:AB045036) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa.
       0.773
ECA2774
Conserved hypothetical protein; Similar to Salmonella typhimurium putative cytoplasmic protein stm4214 SWALL:Q8ZKJ1 (EMBL:AE008897) (65 aa) fasta scores: E(): 2.6e-10, 54.68% id in 64 aa, and to Salmonella typhi hypothetical protein Sty1624 SWALL:Q8Z6U2 (EMBL:AL627270) (84 aa) fasta scores: E(): 6.4e-10, 64.58% id in 48 aa.
       0.773
ECA2775
Similar to Salmonella typhi hypothetical protein Sty1623 SWALL:Q8Z6U3 (EMBL:AL627270) (154 aa) fasta scores: E(): 3e-18, 41.09% id in 146 aa, and to Salmonella typhimurium putative cytoplasmic protein stm4215 SWALL:Q8ZKJ0 (EMBL:AE008897) (151 aa) fasta scores: E(): 8.9e-12, 43.24% id in 111 aa.
       0.773
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
 
  
 0.772
trpC
N-(5'-phosphoribosyl)anthranilate isomerase; Similar to Escherichia coli tryptophan biosynthesis protein TrpC [includes: indole-3-glycerol phosphate synthase trpc or b1262 SWALL:TRPC_ECOLI (SWALL:P00909) (452 aa) fasta scores: E(): 1.6e-121, 69.93% id in 449 aa.
 
  
 0.765
trpG
Similar to Serratia marcescens anthranilate synthase component II TrpG SWALL:TRPG_SERMA (SWALL:P00900) (192 aa) fasta scores: E(): 6.3e-60, 85.34% id in 191 aa, and to Yersinia pestis anthranilate synthase component II TrpG or ypo2207 or y2050.1 SWALL:Q8ZEG6 (EMBL:AJ414151) (192 aa) fasta scores: E(): 5.4e-62, 84.89% id in 192 aa.
 
  
 0.691
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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