STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2778Similar to Salmonella typhi putative lipoprotein sty1611 SWALL:Q8Z6V5 (EMBL:AL627270) (216 aa) fasta scores: E(): 2.4e-21, 43.13% id in 204 aa. (224 aa)    
Predicted Functional Partners:
ECA2776
Similar to Salmonella typhi hypothetical protein Sty1613 SWALL:Q8Z6V3 (EMBL:AL627270) (103 aa) fasta scores: E(): 9.4e-20, 59.4% id in 101 aa.
       0.785
ECA2777
Putative exported protein; Similar to Salmonella typhimurium putative inner membrane protein stm4216 SWALL:Q8ZKI9 (EMBL:AE008897) (104 aa) fasta scores: E(): 5e-27, 69.15% id in 107 aa, and to Salmonella typhi putative membrane protein sty1612 SWALL:Q8Z6V4 (EMBL:AL627270) (108 aa) fasta scores: E(): 5.4e-22, 60.18% id in 108 aa.
       0.785
ECA2780
Putative membrane protein; Similar to Salmonella typhi hypothetical protein Sty1608 SWALL:Q8Z6V8 (EMBL:AL627270) (116 aa) fasta scores: E(): 6.3e-27, 66.03% id in 106 aa, and to Salmonella typhimurium putative inner membrane protein stm4218 SWALL:Q8ZKI7 (EMBL:AE008897) (95 aa) fasta scores: E(): 1.9e-12, 52.29% id in 109 aa.
       0.785
ECA2779
Similar to Salmonella typhimurium putative soluble lytic murein transglycosylase stm4217 SWALL:Q8ZKI8 (EMBL:AE008897) (201 aa) fasta scores: E(): 9.4e-53, 62.87% id in 202 aa.
       0.783
prtF
Similar to Erwinia chrysanthemi proteases secretion protein PrtF precursor SWALL:PRTF_ERWCH (SWALL:P23598) (462 aa) fasta scores: E(): 3.6e-123, 73.25% id in 445 aa. Also similar to ECA1534 (48.956% in 431 aa overlap.
       0.515
prtE
Similar to Erwinia chrysanthemi proteases secretion protein PrtE SWALL:PRTE_ERWCH (SWALL:P23597) (448 aa) fasta scores: E(): 9.7e-110, 72.33% id in 441 aa. Also similar to ECA1535 (47.529% in 425 aa overlap.
       0.515
prtD
Similar to Erwinia chrysanthemi proteases secretion ATP-binding protein PrtD SWALL:PRTD_ERWCH (SWALL:P23596) (575 aa) fasta scores: E(): 1.2e-155, 74.6% id in 575 aa. Also similar to ECA1536 (58.719% in 562 aa overlap.
       0.462
inh
Protease inhibitor; Similar to Pectobacterium carotovorum subsp. carotovorum protease inhibitor Inh SWALL:Q9RB19 (EMBL:AF141295) (103 aa) fasta scores: E(): 4.8e-37, 89.32% id in 103 aa, and to Erwinia chrysanthemi proteinase inhibitor precursor Inh SWALL:INH_ERWCH (SWALL:P18958) (120 aa) fasta scores: E(): 7.6e-21, 57.28% id in 103 aa.
       0.441
ECA2773
Bacteriophage tail sheath protein (partial); Similar to the N-terminal regions of many including Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa, and to Pectobacterium carotovorum subsp. carotovorum tail sheath protein SWALL:Q9KW62 (EMBL:AB045036) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa.
       0.410
ECA2774
Conserved hypothetical protein; Similar to Salmonella typhimurium putative cytoplasmic protein stm4214 SWALL:Q8ZKJ1 (EMBL:AE008897) (65 aa) fasta scores: E(): 2.6e-10, 54.68% id in 64 aa, and to Salmonella typhi hypothetical protein Sty1624 SWALL:Q8Z6U2 (EMBL:AL627270) (84 aa) fasta scores: E(): 6.4e-10, 64.58% id in 48 aa.
       0.410
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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