STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2779Similar to Salmonella typhimurium putative soluble lytic murein transglycosylase stm4217 SWALL:Q8ZKI8 (EMBL:AE008897) (201 aa) fasta scores: E(): 9.4e-53, 62.87% id in 202 aa. (203 aa)    
Predicted Functional Partners:
ECA2780
Putative membrane protein; Similar to Salmonella typhi hypothetical protein Sty1608 SWALL:Q8Z6V8 (EMBL:AL627270) (116 aa) fasta scores: E(): 6.3e-27, 66.03% id in 106 aa, and to Salmonella typhimurium putative inner membrane protein stm4218 SWALL:Q8ZKI7 (EMBL:AE008897) (95 aa) fasta scores: E(): 1.9e-12, 52.29% id in 109 aa.
 
    0.951
ECA2777
Putative exported protein; Similar to Salmonella typhimurium putative inner membrane protein stm4216 SWALL:Q8ZKI9 (EMBL:AE008897) (104 aa) fasta scores: E(): 5e-27, 69.15% id in 107 aa, and to Salmonella typhi putative membrane protein sty1612 SWALL:Q8Z6V4 (EMBL:AL627270) (108 aa) fasta scores: E(): 5.4e-22, 60.18% id in 108 aa.
 
    0.945
ECA2776
Similar to Salmonella typhi hypothetical protein Sty1613 SWALL:Q8Z6V3 (EMBL:AL627270) (103 aa) fasta scores: E(): 9.4e-20, 59.4% id in 101 aa.
 
     0.934
ECA3713
Putative phage-related membrane protein; Similar to Salmonella typhi hypothetical protein Sty1608 SWALL:Q8Z6V8 (EMBL:AL627270) (116 aa) fasta scores: E(): 3.5e-27, 76.47% id in 102 aa, and to Salmonella typhimurium putative inner membrane protein stm4218 SWALL:Q8ZKI7 (EMBL:AE008897) (95 aa) fasta scores: E(): 1.2e-08, 52.94% id in 102 aa.
 
    0.794
ECA2778
Similar to Salmonella typhi putative lipoprotein sty1611 SWALL:Q8Z6V5 (EMBL:AL627270) (216 aa) fasta scores: E(): 2.4e-21, 43.13% id in 204 aa.
       0.783
ECA3716
Similar to Salmonella typhimurium putative inner membrane protein stm4216 SWALL:Q8ZKI9 (EMBL:AE008897) (104 aa) fasta scores: E(): 2.8e-25, 70.29% id in 101 aa, and to Salmonella typhi putative membrane protein sty1612 SWALL:Q8Z6V4 (EMBL:AL627270) (108 aa) fasta scores: E(): 8.4e-22, 61.11% id in 108 aa.
 
    0.770
ECA2773
Bacteriophage tail sheath protein (partial); Similar to the N-terminal regions of many including Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa, and to Pectobacterium carotovorum subsp. carotovorum tail sheath protein SWALL:Q9KW62 (EMBL:AB045036) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa.
 
    0.751
rdgB
Regulator of pectin lyase production; Similar to Erwinia carotovora DNA-binding protein RdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 2.2e-41, 94.01% id in 117 aa, and to Bacteriophage Mu middle operon regulator Mor or 17 or e17 SWALL:VMOR_BPMU (SWALL:P23848) (129 aa) fasta scores: E(): 4.3e-06, 34.28% id in 105 aa.
 
     0.750
ECA3704
Similar to Salmonella typhi hypothetical protein Sty1604 SWALL:Q8Z6W2 (EMBL:AL627270) (589 aa) fasta scores: E(): 4.3e-189, 82% id in 589 aa, and to Vibrio cholerae hypothetical protein Vc1799 SWALL:Q9KR47 (EMBL:AE004256) (585 aa) fasta scores: E(): 1.4e-49, 33.63% id in 559 aa.
  
     0.748
ECA3695
Phage regulatory protein protein; Similar to Bacteriophage Mu positive regulator of late transcription C SWALL:VPC_BPMU (SWALL:P06022) (140 aa) fasta scores: E(): 0.00077, 32.14% id in 112 aa and to Erwinia carotovora DNA-binding protein RdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 1.8e-22, 60.19% id in 103 aa, and to Salmonella typhi putative bacteriophage transcriptional regulator sty1591 SWALL:Q8Z6X3 (EMBL:AL627270) (129 aa) fasta scores: E(): 5.5e-35, 67.44% id in 129 aa. Also similar to ECA2437 (59.259% id. in 108 aa overlap).
 
     0.746
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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