STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2788LysE-family translocator; Similar to Escherichia coli, and Escherichia coli O157:H7 threonine efflux protein RhtC or b3823 or z5344 or ecs4753 SWALL:RHTC_ECOLI (SWALL:P27846) (206 aa) fasta scores: E(): 2.5e-13, 32.05% id in 209 aa, and to Pseudomonas putida transporter, LysE family pp3021 SWALL:AAN68629 (EMBL:AE016785) (204 aa) fasta scores: E(): 8.9e-26, 42.71% id in 199 aa. (215 aa)    
Predicted Functional Partners:
ECA2787
Similar to Pseudomonas putida transcriptional regulator, AraC family pp3022 SWALL:AAN68630 (EMBL:AE016785) (269 aa) fasta scores: E(): 5.3e-24, 35.03% id in 274 aa, and to Rhizobium meliloti putative transcription regulator protein r01128 or smc00558 SWALL:Q92R06 (EMBL:AL591786) (285 aa) fasta scores: E(): 1.2e-17, 29.65% id in 263 aa.
 
     0.758
ECA0616
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein 6 pa2916 SWALL:Q9HZT1 (EMBL:AE004718) (197 aa) fasta scores: E(): 1.2e-35, 47.93% id in 194 aa, and to Pseudomonas putida membrane protein, putative pp2429 SWALL:AAN68041 (EMBL:AE016783) (194 aa) fasta scores: E(): 1.9e-31, 44.61% id in 195 aa.
  
     0.567
dinG
Probable ATP-dependent helicase; DNA-dependent ATPase and 5'-3' DNA helicase.
       0.416
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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