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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idiPutative isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). (179 aa)    
Predicted Functional Partners:
ispH
IspH protein (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase); Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.
 
   
 0.943
ispA
Geranyltranstransferase; Similar to Escherichia coli geranyltranstransferase IspA or b0421 SWALL:ISPA_ECOLI (SWALL:P22939) (299 aa) fasta scores: E(): 4.8e-79, 71.76% id in 301 aa; Belongs to the FPP/GGPP synthase family.
  
 
 0.925
ECA3579
Methyl-accepting chemotaxis protein; Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 3.8e-72, 44.13% id in 503 aa, and to Yersinia pestis putative methyl-accepting chemotaxis protein ypo1644 SWALL:Q8ZFP9 (EMBL:AJ414149) (526 aa) fasta scores: E(): 1.2e-89, 53.01% id in 515 aa.
      
 0.544
hrpJ
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. atrosepticum secretion protein HrpJ type III HrpJ SWALL:Q8KM25 (EMBL:AJ496800) (402 aa) fasta scores: E(): 1.2e-121, 90.79% id in 402 aa, and to Erwinia chrysanthemi HrpJ WALL:AAO34609 (EMBL:AY169276) (393 aa) fasta scores: E(): 2.3e-80, 64.59% id in 387 aa.
  
   
 0.525
bglX
Similar to Escherichia coli periplasmic beta-glucosidase precursor BglX or b2132 SWALL:BGLX_ECOLI (SWALL:P33363) (765 aa) fasta scores: E(): 3.4e-216, 73.3% id in 768 aa, and to Salmonella typhimurium periplasmic beta-glucosidase precursor BglX or stm2166 SWALL:BGLX_SALTY (SWALL:Q56078) (765 aa) fasta scores: E(): 3.9e-217, 73.17% id in 768 aa; Belongs to the glycosyl hydrolase 3 family.
       0.501
ECA0114
Putative membrane protein; Similar to Escherichia coli O6 hypothetical protein c1694 SWALL:AAN80161 (EMBL:AE016760) (374 aa) fasta scores: E(): 9.6e-86, 56.09% id in 369 aa.
  
  
 0.499
aer1
Aerotaxis receptor; Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 9.2e-69, 40.31% id in 501 aa. Also similar to ECA2002 (64.808% id in 520 aa overlap).
      
 0.474
aer2
Aerotaxis receptor; Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 1.7e-71, 41.82% id in 514 aa. Also similar to ECA2001 (64.808% id in 520 aa overlap).
      
 0.473
ECA0113
Putative membrane protein; Similar to Escherichia coli O6 hypothetical protein c1693 SWALL:AAN80160 (EMBL:AE016760) (204 aa) fasta scores: E(): 5.5e-40, 58.69% id in 184 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0404 SWALL:Q8XSR3 (EMBL:AL646078) (220 aa) fasta scores: E(): 9.5e-09, 31.25% id in 208 aa.
  
  
 0.457
hrcC
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcC SWALL:Q93FZ1 (EMBL:AF302656) (689 aa) fasta scores: E(): 0, 95.78% id in 688 aa, and to Erwinia amylovora HrcC precursor SWALL:Q46625 (EMBL:U56662) (676 aa) fasta scores: E(): 1.3e-169, 68.65% id in 654 aa.
      
 0.456
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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