Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
idiPutative isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). (179 aa)    
Predicted Functional Partners:
ispH
IspH protein (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase); Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.
 
   
 0.985
ispA
Geranyltranstransferase; Similar to Escherichia coli geranyltranstransferase IspA or b0421 SWALL:ISPA_ECOLI (SWALL:P22939) (299 aa) fasta scores: E(): 4.8e-79, 71.76% id in 301 aa; Belongs to the FPP/GGPP synthase family.
  
 
 0.980
ECA0113
Putative membrane protein; Similar to Escherichia coli O6 hypothetical protein c1693 SWALL:AAN80160 (EMBL:AE016760) (204 aa) fasta scores: E(): 5.5e-40, 58.69% id in 184 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0404 SWALL:Q8XSR3 (EMBL:AL646078) (220 aa) fasta scores: E(): 9.5e-09, 31.25% id in 208 aa.
  
 
 0.562
ECA3579
Methyl-accepting chemotaxis protein; Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 3.8e-72, 44.13% id in 503 aa, and to Yersinia pestis putative methyl-accepting chemotaxis protein ypo1644 SWALL:Q8ZFP9 (EMBL:AJ414149) (526 aa) fasta scores: E(): 1.2e-89, 53.01% id in 515 aa.
      
 0.530
hrpJ
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. atrosepticum secretion protein HrpJ type III HrpJ SWALL:Q8KM25 (EMBL:AJ496800) (402 aa) fasta scores: E(): 1.2e-121, 90.79% id in 402 aa, and to Erwinia chrysanthemi HrpJ WALL:AAO34609 (EMBL:AY169276) (393 aa) fasta scores: E(): 2.3e-80, 64.59% id in 387 aa.
  
   
 0.529
bglX
Similar to Escherichia coli periplasmic beta-glucosidase precursor BglX or b2132 SWALL:BGLX_ECOLI (SWALL:P33363) (765 aa) fasta scores: E(): 3.4e-216, 73.3% id in 768 aa, and to Salmonella typhimurium periplasmic beta-glucosidase precursor BglX or stm2166 SWALL:BGLX_SALTY (SWALL:Q56078) (765 aa) fasta scores: E(): 3.9e-217, 73.17% id in 768 aa; Belongs to the glycosyl hydrolase 3 family.
       0.501
ECA0114
Putative membrane protein; Similar to Escherichia coli O6 hypothetical protein c1694 SWALL:AAN80161 (EMBL:AE016760) (374 aa) fasta scores: E(): 9.6e-86, 56.09% id in 369 aa.
  
  
 0.483
dxs
1-deoxy-D-xylulose 5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
     
 0.474
aer1
Aerotaxis receptor; Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 9.2e-69, 40.31% id in 501 aa. Also similar to ECA2002 (64.808% id in 520 aa overlap).
      
 0.468
aer2
Aerotaxis receptor; Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 1.7e-71, 41.82% id in 514 aa. Also similar to ECA2001 (64.808% id in 520 aa overlap).
      
 0.467
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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