Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECA2802Peptidase; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. (409 aa)    
Predicted Functional Partners:
argE
Similar to Escherichia coli acetylornithine deacetylase ArgE or b3957 SWALL:ARGE_ECOLI (SWALL:P23908) (383 aa) fasta scores: E(): 2.1e-137, 83.02% id in 383 aa; Belongs to the peptidase M20A family. ArgE subfamily.
    
 0.784
rhiE
Rhamnogalacturonate lyase; Similar to Erwinia chrysanthemi rhamnogalacturonase precursor RhiE SWALL:Q8RJP2 (EMBL:AJ438339) (578 aa) fasta scores: E(): 1.3e-133, 60.1% id in 554 aa. The only other significant database matches are of eukaryotic origin.
      
 0.691
ECA2801
Similar to Escherichia coli periplasmic dipeptide transport protein precursor DppA or b3544 SWALL:DPPA_ECOLI (SWALL:P23847) (535 aa) fasta scores: E(): 9.4e-154, 66.66% id in 531 aa.
       0.528
ECA2009
Putative exported protease; Similar to Shigella flexneri orf, conserved hypothetical protein sf1619 SWALL:AAN43202 (EMBL:AE015183) (273 aa) fasta scores: E(): 1.1e-59, 57.35% id in 272 aa, and to Escherichia coli putative protease ydgd precursor ydgd or b1598 SWALL:YDGD_ECOLI (SWALL:P76176) (273 aa) fasta scores: E(): 1.8e-59, 57.35% id in 272 aa; Belongs to the peptidase S1B family.
   
  
 0.490
ECA2135
Similar to Erwinia carotovora periplasmic pectate lyase precursor PelB SWALL:PELP_ERWCA (SWALL:P14005) (568 aa) fasta scores: E(): 0, 97% id in 568 aa, and to Erwinia carotovora pectatelyase SWALL:Q47466 (EMBL:J03673) (568 aa) fasta scores: E(): 0, 96.3% id in 568 aa. Also similar to ECA2402 (PelB) (37.782% id 532 aa overlap).
      
 0.489
fumA
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
    0.465
outN
Similar to Erwinia carotovora general secretion pathway protein N OutN SWALL:GSPN_ERWCA (SWALL:P31710) (248 aa) fasta scores: E(): 3e-88, 88.71% id in 248 aa, and to Klebsiella pneumoniae general secretion pathway protein N PulN SWALL:GSPN_KLEPN (SWALL:P15753) (252 aa) fasta scores: E(): 2.5e-26, 35.88% id in 248 aa.
      
 0.465
bcsZ
Endoglucanase; Similar to Escherichia coli endoglucanase precursor BcsZ or BcsC or b3531 SWALL:GUN_ECOLI (SWALL:P37651) (368 aa) fasta scores: E(): 1.1e-87, 60.49% id in 367 aa, and to Erwinia chrysanthemi endo-1,4-beta-D-glucanase precursor Cel8Y SWALL:Q9APJ5 (EMBL:AF282321) (332 aa) fasta scores: E(): 7e-18, 29.11% id in 340 aa.
      
 0.455
ECA1350
Similar to Yersinia pestis hypothetical protein ypo2697 or y1272 SWALL:YQ97_YERPE (SWALL:Q8ZD91) (247 aa) fasta scores: E(): 1.6e-77, 76.92% id in 247 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical protein ybgi or stm0711 or sty0751 SWALL:YBGI_SALTY (SWALL:Q8XFW7) (247 aa) fasta scores: E(): 1.1e-71, 72.06% id in 247 aa.
  
    0.446
prt1
Extracellular metalloprotease; Extracellular zinc metalloprotease.
      
 0.411
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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