STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2804Conserved hypothetical protein; Similar to Yersinia enterocolitica hypothetical 16.3 kDa protein SWALL:Q9F4G7 (EMBL:AY008264) (148 aa) fasta scores: E(): 2.5e-16, 40.14% id in 142 aa, and to Yersinia pestis hypothetical protein ypo2345 or y1987 SWALL:Q8ZE40 (EMBL:AJ414152) (148 aa) fasta scores: E(): 1.3e-15, 38.84% id in 139 aa. (147 aa)    
Predicted Functional Partners:
ECA2803
Conserved hypothetical protein; Similar to Yersinia enterocolitica hypothetical 17.2 kDa protein SWALL:Q9F4G8 (EMBL:AY008264) (152 aa) fasta scores: E(): 1e-21, 40.13% id in 152 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:BAC41696 (EMBL:AB088420) (145 aa) fasta scores: E(): 4.7e-11, 36.77% id in 155 aa.
 
 
 0.998
rhlE
Putative ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
       0.438
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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