STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbrASimilar to Erwinia chrysanthemi achromobactin-binding periplasmic protein precursor CbrA SWALL:CBRA_ERWCH (SWALL:Q47084) (305 aa) fasta scores: E(): 1.5e-62, 63.74% id in 262 aa. (335 aa)    
Predicted Functional Partners:
cbrD
Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa.
 
 0.977
cbrC
Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrC SWALL:CBRC_ERWCH (SWALL:Q47086) (349 aa) fasta scores: E(): 4.9e-69, 61.91% id in 344 aa.
 
 0.957
cbrB
Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrB SWALL:CBRB_ERWCH (SWALL:Q47085) (340 aa) fasta scores: E(): 8.6e-66, 58.15% id in 325 aa.
 
 0.941
acr
TonB-dependent ferric achromobactin receptor; Similar to Erwinia chrysanthemi Acr SWALL:Q93AT9 (EMBL:AF416740) (482 aa) fasta scores: E(): 2.5e-108, 57.76% id in 483 aa.
 
    0.815
fhuC
Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 7.5e-80, 79.92% id in 264 aa.
 
 0.814
ECA4254
Putative iron(III) ABC transporter ATP-binding protein; Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 1.2e-25, 37.5% id in 256 aa, and to Brucella melitensis iron(III) dicitrate transport ATP-binding protein bmeii0537 SWALL:Q8YCJ1 (EMBL:AE009689) (264 aa) fasta scores: E(): 6e-28, 42.21% id in 244 aa.
 
 0.694
ECA3094
Similar to Haemophilus influenzae hypothetical ABC transporter ATP-binding protein Hi1470 SWALL:YE70_HAEIN (SWALL:Q57399) (253 aa) fasta scores: E(): 9.5e-36, 46.12% id in 245 aa, and to Pasteurella multocida hypothetical protein Pm1147 SWALL:Q9CLR4 (EMBL:AE006155) (246 aa) fasta scores: E(): 1.2e-38, 47.22% id in 252 aa.
  
 0.643
ECA3243
Putative ferric-enterobactin ABC transporter ATP-binding protein; Similar to Escherichia coli ferric-enterobactin-transport protein SWALL:Q8VR78 (EMBL:AF447814) (255 aa) fasta scores: E(): 7.9e-59, 67.05% id in 255 aa, and to Yersinia pestis putative siderophore ABC transporter, ATP-binding subunit ypo1312 or yiuc or y2873 SWALL:AAM86424 (EMBL:AJ414147) (262 aa) fasta scores: E(): 1.4e-74, 81.15% id in 260 aa.
  
 0.643
fecE
iron(III) dicitrate transport ATP-binding protein; Similar to Escherichia coli iron FecE or b4287 SWALL:FECE_ECOLI (SWALL:P15031) (255 aa) fasta scores: E(): 8.2e-64, 67.84% id in 255 aa, and to Shigella flexneri 2a ATP-binding protein FecE SWALL:AAL08451 (EMBL:AF326777) (255 aa) fasta scores: E(): 8.2e-64, 67.84% id in 255 aa.
 
     0.641
fhuB
Similar to Escherichia coli ferrichrome transport system permease protein FhuB or b0153 SWALL:FHUB_ECOLI (SWALL:P06972) (660 aa) fasta scores: E(): 2.2e-156, 63.41% id in 656 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  0.637
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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