STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbrASimilar to Erwinia chrysanthemi achromobactin-binding periplasmic protein precursor CbrA SWALL:CBRA_ERWCH (SWALL:Q47084) (305 aa) fasta scores: E(): 1.5e-62, 63.74% id in 262 aa. (335 aa)    
Predicted Functional Partners:
cbrD
Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa.
 
 
 0.971
cbrC
Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrC SWALL:CBRC_ERWCH (SWALL:Q47086) (349 aa) fasta scores: E(): 4.9e-69, 61.91% id in 344 aa.
 
 
 0.957
cbrB
Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrB SWALL:CBRB_ERWCH (SWALL:Q47085) (340 aa) fasta scores: E(): 8.6e-66, 58.15% id in 325 aa.
 
 
 0.945
acr
TonB-dependent ferric achromobactin receptor; Similar to Erwinia chrysanthemi Acr SWALL:Q93AT9 (EMBL:AF416740) (482 aa) fasta scores: E(): 2.5e-108, 57.76% id in 483 aa.
 
  
 0.836
fhuC
Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 7.5e-80, 79.92% id in 264 aa.
 
 
 0.765
fhuB
Similar to Escherichia coli ferrichrome transport system permease protein FhuB or b0153 SWALL:FHUB_ECOLI (SWALL:P06972) (660 aa) fasta scores: E(): 2.2e-156, 63.41% id in 656 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.659
fecE
iron(III) dicitrate transport ATP-binding protein; Similar to Escherichia coli iron FecE or b4287 SWALL:FECE_ECOLI (SWALL:P15031) (255 aa) fasta scores: E(): 8.2e-64, 67.84% id in 255 aa, and to Shigella flexneri 2a ATP-binding protein FecE SWALL:AAL08451 (EMBL:AF326777) (255 aa) fasta scores: E(): 8.2e-64, 67.84% id in 255 aa.
 
     0.643
ECA4254
Putative iron(III) ABC transporter ATP-binding protein; Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 1.2e-25, 37.5% id in 256 aa, and to Brucella melitensis iron(III) dicitrate transport ATP-binding protein bmeii0537 SWALL:Q8YCJ1 (EMBL:AE009689) (264 aa) fasta scores: E(): 6e-28, 42.21% id in 244 aa.
 
 
 0.614
fecD
iron(III) dicitrate transport system permease protein; Similar to Escherichia coli iron FecD or b4288 SWALL:FECD_ECOLI (SWALL:P15029) (318 aa) fasta scores: E(): 1.6e-85, 69.3% id in 316 aa, and to Shigella flexneri 2a FecD SWALL:Q93F21 (EMBL:AF326777) (318 aa) fasta scores: E(): 2.1e-85, 69.3% id in 316 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.612
fecC
iron(III) dicitrate transport system permease protein; Similar to Escherichia coli iron FecC or b4289 SWALL:FECC_ECOLI (SWALL:P15030) (332 aa) fasta scores: E(): 2.5e-94, 74.09% id in 332 aa, and to Shigella flexneri 2a FecC SWALL:Q93F20 (EMBL:AF326777) (325 aa) fasta scores: E(): 2.3e-93, 75.46% id in 322 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.607
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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