STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2829Puatative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative transmembrane protein yohk or stm2182 or sty2412 SWALL:Q8XGP7 (EMBL:AE008797) (231 aa) fasta scores: E(): 2.5e-65, 80.17% id in 227 aa, and to Yersinia pestis putative membrane protein ypo1513 or y2655 SWALL:Q8ZG07 (EMBL:AJ414148) (231 aa) fasta scores: E(): 1e-63, 76.62% id in 231 aa. (231 aa)    
Predicted Functional Partners:
ECA2828
Similar to Yersinia pestis putative membrane protein ypo1514 SWALL:Q8ZG06 (EMBL:AJ414148) (135 aa) fasta scores: E(): 5.1e-33, 66.15% id in 130 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yohj or b2141 or c2673 or sf2226 SWALL:YOHJ_ECOLI (SWALL:P33372) (132 aa) fasta scores: E(): 4.3e-32, 64.84% id in 128 aa.
 
  
 0.993
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
       0.523
ECA1344
Similar to Yersinia pestis putative membrane protein ypo2693 SWALL:Q8ZD95 (EMBL:AJ414153) (68 aa) fasta scores: E(): 4.2e-22, 73.52% id in 68 aa, and to Salmonella typhimurium putative periplasmic protein ybfa or stm0708 SWALL:Q8ZQV9 (EMBL:AE008728) (68 aa) fasta scores: E(): 3.2e-20, 72.05% id in 68 aa.
  
    0.456
celB
Beta(1,4)-glucan glucanohydrolase; Similar to Pectobacterium carotovorum subsp. carotovorum beta(1,4)-glucan glucanohydrolase CelB SWALL:O31030 (EMBL:AF025769) (264 aa) fasta scores: E(): 1.1e-97, 91.66% id in 264 aa, and to Erwinia carotovora endoglucanase S precursor CelS SWALL:GUNS_ERWCA (SWALL:P16630) (264 aa) fasta scores: E(): 1.9e-93, 85.6% id in 264 aa; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
       0.438
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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