STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2841Similar to Pseudomonas putida transcriptional regulator, GntR family pp2066 SWALL:AAN67680 (EMBL:AE016781) (254 aa) fasta scores: E(): 1.5e-32, 40.83% id in 240 aa, and to Streptomyces coelicolor putative GntR-family transcriptional regulator sco5231 or sc7e4.28C SWALL:Q9K492 (EMBL:AL939123) (254 aa) fasta scores: E(): 8.3e-10, 31.53% id in 241 aa. (246 aa)    
Predicted Functional Partners:
ECA0348
GntR-family transcriptional regulator; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical transcriptional regulator YegW SWALL:YEGW_ECOLI (SWALL:P76420) (248 aa) fasta scores: E(): 3.2e-22, 30.8% id in 237 aa.
  
     0.754
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
   
  
 0.646
pcaB
Similar to Acinetobacter calcoaceticus 3-carboxy-cis,cis-muconate cycloisomerase PcaB SWALL:PCAB_ACICA (SWALL:Q59092) (452 aa) fasta scores: E(): 2.3e-62, 41.03% id in 446 aa, and to Bradyrhizobium japonicum pcab protein PcaB or bll7942 SWALL:BAC53207 (EMBL:AP005964) (453 aa) fasta scores: E(): 1.1e-126, 72.93% id in 447 aa.
 
   
 0.632
ECA0190
Similar to Bacillus halodurans transcriptional regulator bh3917 SWALL:Q9K616 (EMBL:AP001520) (261 aa) fasta scores: E(): 6.3e-11, 26.81% id in 220 aa, and to Escherichia coli fatty acyl responsive regulator FarR SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 1.8e-09, 26.81% id in 220 aa.
  
     0.562
ECA0853
LacI-family transcriptional regulator; Similar to Escherichia coli ebg operon repressor EbgR or b3075 SWALL:EBGR_ECOLI (SWALL:P06846) (327 aa) fasta scores: E(): 3.5e-19, 32.71% id in 321 aa, and to Streptococcus thermophilus galactose operon repressor GalR SWALL:GALR_STRTR (SWALL:Q9ZB11) (331 aa) fasta scores: E(): 1.3e-12, 31.42% id in 350 aa.
  
   
 0.497
phnJ
Putative phosphonate metabolism protein; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
  
 0.482
phnG
Putative phosphonate metabolism protein; Similar to Escherichia coli PhnG protein PhnG or b4101 SWALL:PHNG_ECOLI (SWALL:P16685) (150 aa) fasta scores: E(): 8.5e-27, 50.68% id in 146 aa.
 
  
 0.481
phnI
Putative phosphonate metabolism protein; Similar to Yersinia pestis PhnI protein SWALL:Q8ZBF7 (EMBL:AJ414157) (392 aa) fasta scores: E(): 3.9e-100, 72.65% id in 362 aa, and to Escherichia coli PhnI SWALL:PHNI_ECOLI (SWALL:P16687) (354 aa) fasta scores: E(): 8.5e-95, 69.46% id in 357 aa.
 
  
 0.454
phnH
Putative phosphonate metabolism protein; Similar to Escherichia coli PhnH protein phnH SWALL:PHNH_ECOLI (SWALL:P16686) (194 aa) fasta scores: E(): 5.7e-26, 41.57% id in 190 aa.
 
  
 0.449
ECA2456
Probable transcriptional regulator (partial); Partial CDS. Similar to the C-terminal regions of many including Pseudomonas aeruginosa probable transcriptional regulator pa2488 SWALL:Q9I0Z4 (EMBL:AE004676) (254 aa) fasta scores: E(): 0.0017, 50% id in 42 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20956 SWALL:AAO07868 (EMBL:AE016811) (259 aa) fasta scores: E(): 0.0035, 48.78% id in 41 aa.
  
  
 0.424
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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