STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nosATonB dependent receptor; Similar to Pseudomonas stutzeri NosA protein precursor NosA SWALL:Q00620 (EMBL:M60717) (683 aa) fasta scores: E(): 9.3e-150, 57.39% id in 669 aa, and to Yersinia pestis putative membrane receptor protein ypo0164 or y3948 SWALL:Q8ZJE5 (EMBL:AJ414141) (686 aa) fasta scores: E(): 4.6e-177, 64.46% id in 667 aa. (669 aa)    
Predicted Functional Partners:
ECA1775
Similar to Corynebacterium glutamicum uncharacterized iron-regulated membrane protein cgl2326 SWALL:Q8NN80 (EMBL:AP005281) (475 aa) fasta scores: E(): 3.2e-31, 36.8% id in 451 aa, and to Streptomyces coelicolor putative integral membrane protein sco0863 or scm2.16C SWALL:Q9RCU8 (EMBL:AL939107) (485 aa) fasta scores: E(): 1.6e-21, 39.44% id in 464 aa.
 
  
 0.629
ECA2846
Similar to Pseudomonas aeruginosa hypothetical protein Pa3791 SWALL:Q9HXK6 (EMBL:AE004798) (153 aa) fasta scores: E(): 3.2, 27.51% id in 149 aa.
  
    0.579
ECA0877
TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.493
ECA0928
TonB-like protein; Similar to Salmonella typhimurium TonB protein SWALL:TONB_SALTY (SWALL:P25945) (242 aa) fasta scores: E(): 6.8e-09, 35.93% id in 192 aa, and to Escherichia coli TonB protein SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 6.5e-07, 37.91% id in 182 aa.
  
 
 0.493
tonB
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.493
ECA0059
TonB-like protein; Similar to Yersinia pestis putative membrane protein ypo3918 SWALL:Q8ZA93 (EMBL:AJ414159) (267 aa) fasta scores: E(): 1.7e-17, 34.7% id in 268 aa, and to Shigella flexneri, and Escherichia coli CjrB SWALL:Q933Q6 (EMBL:AF283292) (258 aa) fasta scores: E(): 7.9e-14, 30.59% id in 268 aa, and to Pseudomonas putida TonB SWALL:Q93PQ7 (EMBL:AF315582) (243 aa) fasta scores: E(): 1.5e-10, 31.74% id in 252 aa.
  
 
 0.475
ECA1272
TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.475
tonB-2
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.475
expR
Quorum-sensing transcriptional regulator; Similar to Pectobacterium carotovorum subsp. betavasculorum LuxR homolog EcbR SWALL:O30346 (EMBL:AF001050) (242 aa) fasta scores: E(): 3.8e-85, 93.38% id in 242 aa, and to Erwinia chrysanthemi transcriptional activator protein EchR SWALL:ECHR_ERWCH (SWALL:Q46967) (250 aa) fasta scores: E(): 3.6e-54, 58.61% id in 244 aa, and to Erwinia carotovora transcriptional activator protein ExpR SWALL:EXPR_ERWCA (SWALL:Q47189) (245 aa) fasta scores: E(): 1.5e-56, 61.57% id in 244 aa. Also similar to ECA1561 (67.839%% in 199 aa overlap).
  
     0.465
ECA2844
Putative membrane protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yqae or b2666 or c3215 or z3965 or ecs3527 SWALL:YQAE_ECOLI (SWALL:P77240) (52 aa) fasta scores: E(): 8.5e-17, 82.69% id in 52 aa, and to Salmonella typhimurium, and Salmonella typhi putative yqae family transport protein yqae or stm2796 or sty2916 SWALL:Q8XF49 (EMBL:AE008827) (52 aa) fasta scores: E(): 6.7e-16, 82.35% id in 51 aa.
       0.454
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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