Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA2854Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 13.8 kDa protein SWALL:Q9AL43 (EMBL:AF200692) (126 aa) fasta scores: E(): 8.4e-25, 64.76% id in 105 aa, and to Escherichia coli hypothetical protein yeeU SWALL:CAD42100 (EMBL:AJ494981) (122 aa) fasta scores: E(): 1.3e-24, 63.46% id in 104 aa. (125 aa)    
Predicted Functional Partners:
ECA2855
Conserved hypothetical protein; Similar to Shigella flexneri intergenic-region protein yees or sf2996 SWALL:AAN44477 (EMBL:AE015313) (163 aa) fasta scores: E(): 4.9e-27, 50.65% id in 152 aa, and to Escherichia coli intergenic-region protein SWALL:Q8VRA3 (EMBL:AF447814) (163 aa) fasta scores: E(): 5.7e-27, 50.65% id in 152 aa, and to Escherichia coli DNA repair protein RadC or b3638 SWALL:RADC_ECOLI (SWALL:P25531) (222 aa) fasta scores: E(): 5.6e-23, 47.51% id in 141 aa; Belongs to the UPF0758 family.
  
  
 0.817
ECA2853
Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 14.0 kDa protein SWALL:Q9AL42 (EMBL:AF200692) (125 aa) fasta scores: E(): 1.5e-21, 58.65% id in 104 aa, and to Escherichia coli hypothetical protein ykfi or b0245 SWALL:YKFI_ECOLI (SWALL:P77692) (113 aa) fasta scores: E(): 1.4e-29, 72.38% id in 105 aa.
  
  
 0.754
mreB
Rod shape-determining protein; Similar to Escherichia coli, Escherichia coli O6, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri rod shape-determining protein MreB or EnvB or RodY or b3251 or c4006 or stm3374 or sty3554 or t3289 or sf3289 SWALL:MREB_ECOLI (SWALL:P13519) (347 aa) fasta scores: E(): 1.7e-117, 97.11% id in 347 aa.
    
 
 0.514
ECA2856
Putative exported protein; Similar to Vibrio cholerae hypothetical protein Vc0505 SWALL:Q9KUL3 (EMBL:AE004136) (122 aa) fasta scores: E(): 0.42, 27.58% id in 116 aa, and to Helicobacter pylori hypothetical protein Hp0204 SWALL:O24996 (EMBL:AE000540) (127 aa) fasta scores: E(): 2.2, 32.18% id in 87 aa.
       0.501
ftsZ
Cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
    
 
 0.435
ECA2857
Putative exported protein; No significant database matches.
       0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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