STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2860Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 32.4 kDa protein SWALL:Q93F04 (EMBL:AF326777) (290 aa) fasta scores: E(): 3.4e-37, 43.43% id in 297 aa, and to Escherichia coli hypothetical 32.5 kDa protein SWALL:Q8RLA4 (EMBL:AY082443) (290 aa) fasta scores: E(): 2.6e-37, 43.43% id in 297 aa. (295 aa)    
Predicted Functional Partners:
ECA2859
Hypothetical protein; No significant database matches.
       0.773
ECA2858
Hypothetical protein; No significant database matches.
       0.631
ECA2242
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.603
ECA1873
Putative glycosyl hydrolase exoenzyme; Similar to Escherichia coli O6 hypothetical protein yiel or c4641 SWALL:AAN83073 (EMBL:AE016769) (400 aa) fasta scores: E(): 4.7e-106, 70.57% id in 401 aa, and to Shigella flexneri putative xylanase yiel or sf3738 SWALL:AAN45183 (EMBL:AE015381) (402 aa) fasta scores: E(): 5.9e-105, 70.07% id in 401 aa.
  
     0.596
ECA2861
Hypothetical protein; No significant database matches.
       0.533
ECA1872
Putative porin; Similar to Aeromonas salmonicida maltoporin precursor LamB SWALL:LAMB_AERSA (SWALL:Q44287) (445 aa) fasta scores: E(): 1.8e-16, 32.18% id in 463 aa, and to Escherichia coli putative outer membrane protein yiec precursor yiec or b3720 SWALL:YIEC_ECOLI (SWALL:P26218) (538 aa) fasta scores: E(): 1.5e-109, 53.09% id in 550 aa.
  
     0.498
ECA2660
Similar to Yersinia pestis hypothetical protein Ypo1362 ypo1362 SWALL:Q8ZGD9 (EMBL:AJ414148) (555 aa) fasta scores: E(): 1.1e-152, 66.3% id in 555 aa, and to Escherichia coli hypothetical protein ybjd or b0876 SWALL:YBJD_ECOLI (SWALL:P75828) (552 aa) fasta scores: E(): 1.3e-148, 67.14% id in 554 aa.
 
     0.460
ECA3521
Similar to Escherichia coli O6 hypothetical protein yfim or c3111 SWALL:Q8FF03 (EMBL:AE016764) (114 aa) fasta scores: E(): 3.8e-26, 56.36% id in 110 aa, and to Salmonella typhi hypothetical protein yfim or t0257 SWALL:AAO67983 (EMBL:AE016834) (107 aa) fasta scores: E(): 3.3e-25, 60% id in 105 aa.
  
     0.458
ECA2490
Putative maltoporin; Weakly similar to Klebsiella pneumoniae maltoporin precursor LamB SWALL:LAMB_KLEPN (SWALL:P31242) (429 aa) fasta scores: E(): 7.1e-14, 25.87% id in 398 aa, and to Escherichia coli maltoporin precursor LamB or MalB or b4036 SWALL:LAMB_ECOLI (SWALL:P02943) (446 aa) fasta scores: E(): 3.4e-05, 24.11% id in 394 aa.
  
     0.449
ECA2630
Phage-related protein; Similar to Salmonella typhimurium phage ST64B Sb30 SWALL:AAL25908 (EMBL:AY055382) (189 aa) fasta scores: E(): 1e-30, 50% id in 186 aa, and in parts to many other Bacteriophage exodeoxyribonuclease. e.g. Bacteriophage T4 DexA SWALL:EXOD_BPT4 (SWALL:P04536) (227 aa) fasta scores: E(): 0.00055, 26.19% id in 210 aa and to the C-terminal region of Escherichia coli O157:H7 putative exonuclease VIII, ds DNA exonuclease, 5'--> 3' specific encoded by prophage CP-933o exoo or z2037 or ecs1759 SWALL:Q8X287 (EMBL:AE005343) (823 aa) fasta scores: E(): 1.2e-27, 44.44% id in 189 aa.
  
     0.440
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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