STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2863Similar to Shigella flexneri orf, conserved hypothetical protein AlpA or sf2987 SWALL:AAN44468 (EMBL:AE015312) (68 aa) fasta scores: E(): 3.4e-18, 78.68% id in 61 aa, and to Escherichia coli O6 conserved hypothetical protein c0306 SWALL:Q8FKT9 (EMBL:AE016755) (68 aa) fasta scores: E(): 2.4e-18, 80.32% id in 61 aa. (70 aa)    
Predicted Functional Partners:
ECA2862
Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 23.4 kDa protein SWALL:Q93F37 (EMBL:AF326777) (197 aa) fasta scores: E(): 2.1e-24, 38.58% id in 184 aa, and to Escherichia coli O6 conserved hypothetical protein c1171 SWALL:AAN79639 (EMBL:AE016758) (197 aa) fasta scores: E(): 1.8e-24, 38.91% id in 185 aa.
       0.545
ECA2864
Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 19.8 kDa protein SWALL:Q93F12 (EMBL:AF326777) (173 aa) fasta scores: E(): 2.2e-16, 41.93% id in 124 aa, and to Escherichia coli O6 hypothetical protein c2498 SWALL:AAN80954 (EMBL:AE016762) (136 aa) fasta scores: E(): 1.8e-16, 41.93% id in 124 aa.
       0.535
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.