STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2865Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 24.0 kDa protein SWALL:Q93F08 (EMBL:AF326777) (202 aa) fasta scores: E(): 6.2e-12, 31.84% id in 179 aa, and to Escherichia coli O6 hypothetical protein c0305 SWALL:AAN78793 (EMBL:AE016755) (202 aa) fasta scores: E(): 7.2e-12, 32.06% id in 184 aa. (193 aa)    
Predicted Functional Partners:
ECA2864
Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 19.8 kDa protein SWALL:Q93F12 (EMBL:AF326777) (173 aa) fasta scores: E(): 2.2e-16, 41.93% id in 124 aa, and to Escherichia coli O6 hypothetical protein c2498 SWALL:AAN80954 (EMBL:AE016762) (136 aa) fasta scores: E(): 1.8e-16, 41.93% id in 124 aa.
       0.472
ECA2866
Similar to Yersinia pestis hypothetical protein ypo3708 or y0036 SWALL:Q8ZAT2 (EMBL:AJ414158) (172 aa) fasta scores: E(): 5.9e-59, 81.39% id in 172 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein z0266 or ecs0234 SWALL:O52671 (EMBL:AF044503) (172 aa) fasta scores: E(): 1.6e-56, 79.65% id in 172 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA3428 (95.349% identity in 172aa overlap) and ECA4275 (94.767% identity in 172aa overlap).
       0.400
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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