STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2870Hypothetical protein; No significant database matches. (138 aa)    
Predicted Functional Partners:
ECA2868
Conserved hypothetical protein; Similar to Photorhabdus luminescens Orf5 SWALL:AAN64197 (EMBL:AY144117) (139 aa) fasta scores: E(): 7.5e-27, 54.81% id in 135 aa, and to Escherichia coli O157:H7 hypothetical protein z0706 or ecs0606 SWALL:Q8XBY6 (EMBL:AE005236) (153 aa) fasta scores: E(): 9.4e-16, 39% id in 141 aa.
       0.773
rhs
Putative RHS protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.1e-128, 41.64% id in 1395 aa, and to Ralstonia solanacearum putative RHS-related transmembrane protein rsp1137 or rs05482 SWALL:Q8XQT2 (EMBL:AL646083) (1517 aa) fasta scores: E(): 3e-74, 32.03% id in 1330 aa.
       0.773
vgrG
Putative RHS accessory genetic element; Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 2.8e-128, 53.96% id in 606 aa, and to Yersinia pestis putative RHS accessory genetic element ypo3606 or y0268 SWALL:Q8ZB23 (EMBL:AJ414158) (800 aa) fasta scores: E(): 1.7e-123, 51.18% id in 633 aa.
       0.678
ECA2866
Similar to Yersinia pestis hypothetical protein ypo3708 or y0036 SWALL:Q8ZAT2 (EMBL:AJ414158) (172 aa) fasta scores: E(): 5.9e-59, 81.39% id in 172 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein z0266 or ecs0234 SWALL:O52671 (EMBL:AF044503) (172 aa) fasta scores: E(): 1.6e-56, 79.65% id in 172 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA3428 (95.349% identity in 172aa overlap) and ECA4275 (94.767% identity in 172aa overlap).
       0.476
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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