STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2873Putative transcriptional regulator; Similar to Salmonella typhimurium colanic acid capsular biosynthesis activation protein A RcsA or stm1982 SWALL:RCSA_SALTY (SWALL:P54698) (207 aa) fasta scores: E(): 1, 25.66% id in 113 aa, and to Citrobacter freundii transcriptional regulatory protein EcnR SWALL:ECNR_CITFR (SWALL:O69280) (199 aa) fasta scores: E(): 0.0024, 30.09% id in 103 aa. (155 aa)    
Predicted Functional Partners:
ECA2872
Putative flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
       0.493
hupA
DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
      
 0.472
accC
Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
      
 0.472
argA
Amino-acid acetyltransferase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 amino-acid acetyltransferase ArgA or b2818 or c3412 or z4135 or ecs3675 SWALL:ARGA_ECOLI (SWALL:P08205) (443 aa) fasta scores: E(): 1.7e-149, 85.26% id in 441 aa, and to Yersinia pestis amino-acid acetyltransferase ArgA or ypo1022 or y3162 SWALL:Q8ZH86 (EMBL:AJ414146) (441 aa) fasta scores: E(): 1.5e-152, 88.43% id in 441 aa; Belongs to the acetyltransferase family. ArgA subfamily.
      
 0.472
ECA1059
Putative integrase; Similar to Escherichia coli O157:H7 putative site specific recombinase ecs3512 SWALL:Q8X3D8 (EMBL:AP002562) (401 aa) fasta scores: E(): 3.9e-44, 35.44% id in 395 aa, and to Staphylococcus aureus transposase a from transposon tn554 SWALL:TNPA_STAAM (SWALL:P06696) (361 aa) fasta scores: E(): 0.039, 23.1% id in 303 aa.
      
 0.472
ECA1065
Hypothetical protein; No significant database matches.
      
 0.472
cyoC
Cytochrome o ubiquinol oxidase subunit III; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome o ubiquinol oxidase subunit iii CyoC or b0430 or c0541 or sf0371 SWALL:CYOC_ECOLI (SWALL:P18402) (204 aa) fasta scores: E(): 2.7e-67, 78.53% id in 205 aa.
      
 0.472
ECA1166
Similar to Yersinia pestis hypothetical protein ypo3137 or y1047 SWALL:Q8ZC84 (EMBL:AJ414155) (122 aa) fasta scores: E(): 8.8e-36, 74.59% id in 122 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ybaj or b0461 or c0579 or z0574 or ecs0514 SWALL:YBAJ_ECOLI (SWALL:P37611) (124 aa) fasta scores: E(): 1.4e-26, 60.83% id in 120 aa.
      
 0.472
hypD
Similar to Escherichia coli hydrogenase isoenzymes formation protein HypD or b2729 SWALL:HYPD_ECOLI (SWALL:P24192) (373 aa) fasta scores: E(): 2.4e-119, 76.55% id in 371 aa; Belongs to the HypD family.
      
 0.472
fdnH
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
      
 0.472
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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