STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA2879Integrase; Similar to Yersinia pestis putative prophage P4 integrase IntB or y0749 SWALL:AAM84336 (EMBL:AE013677) (431 aa) fasta scores: E(): 1.7e-120, 72.53% id in 415 aa, and to Shigella flexneri Int or sf2964 SWALL:AAN44445 (EMBL:AE015309) (420 aa) fasta scores: E(): 3.5e-112, 67.95% id in 415 aa; Belongs to the 'phage' integrase family. (417 aa)    
Predicted Functional Partners:
ECA2754
Putative prophage primase; Similar to Escherichia coli O157:H7 alpha replication protein of prophage cp-933i z0339 or ecs0303 SWALL:Q8X7I5 (EMBL:AE005204) (796 aa) fasta scores: E(): 1.3e-10, 28.27% id in 633 aa, and to Pasteurella multocida hypothetical protein Pm1782 SWALL:Q9CK52 (EMBL:AE006215) (725 aa) fasta scores: E(): 9.7e-95, 45.25% id in 590 aa, and to Bacteriophage P4 DNA primase SWALL:Q8LTT9 (EMBL:AF509493) (362 aa) fasta scores: E(): 2.3e-41, 47.26% id in 347 aa.
 
     0.663
alpA
Similar to Escherichia coli prophage cp4-57 regulatory protein AlpA or Alp or b2624 SWALL:ALPA_ECOLI (SWALL:P33997) (70 aa) fasta scores: E(): 0.00017, 37.28% id in 59 aa, and to Yersinia pseudotuberculosis DNA-binding protein SWALL:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 4.7e-21, 86.88% id in 61 aa.
 
     0.633
ECA2918
Putative phage-related protein; Similar to Bacteriophage P4 hypothetical 9.7 kDa protein SWALL:Y9K_BPP4 (SWALL:P12552) (88 aa) fasta scores: E(): 5.4e-05, 42.3% id in 52 aa, and to Yersinia pseudotuberculosis DNA-binding protein SWALL:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 1.5e-06, 45.45% id in 55 aa.
 
     0.489
ECA0879
Putative zinc protease; Similar to Escherichia coli probable zinc protease PqqL or b1494 SWALL:PQQL_ECOLI (SWALL:P31828) (931 aa) fasta scores: E(): 1.1e-43, 25.42% id in 948 aa, and to Pasteurella multocida PqqL or pm0804 SWALL:Q9CML5 (EMBL:AE006119) (923 aa) fasta scores: E(): 1.9e-47, 23.52% id in 948 aa; deleted EC_number 3.4.99.-; Belongs to the peptidase M16 family.
      
 0.463
ECA4361
Similar to Yersinia pestis putative insulinase family protease ypo3991 or y3837 SWALL:AAM87382 (EMBL:AJ414160) (499 aa) fasta scores: E(): 1.5e-117, 63.56% id in 494 aa, and to Escherichia coli protein yhjj precursor yhjj or b3527 SWALL:YHJJ_ECOLI (SWALL:P37648) (498 aa) fasta scores: E(): 1.7e-106, 55.51% id in 499 aa.
      
 0.463
ECA0560
Putative plasmid transfer protein; Similar to Proteus vulgaris DNA transfer orf202 SWALL:Q8L280 (EMBL:AP004237) (655 aa) fasta scores: E(): 7.6e-30, 26.78% id in 687 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62159 (EMBL:AF440523) (729 aa) fasta scores: E(): 1.3e-165, 62.58% id in 703 aa, and to Providencia rettgeri TraD SWALL:Q8RL14 (EMBL:AY090559) (606 aa) fasta scores: E(): 1.2e-14, 30.74% id in 644 aa.
     
 0.417
ECA0522
Conserved hypothetical protein; Similar to Yersinia pestis orf 77 ypo1902 or y2407 SWALL:Q9Z381 (EMBL:AL031866) (193 aa) fasta scores: E(): 3.1e-19, 37.27% id in 169 aa, and to Salmonella typhi hypothetical protein sty4526 SWALL:Q8Z1L8 (EMBL:AL627282) (185 aa) fasta scores: E(): 1.3e-32, 51.14% id in 174 aa.
      
 0.416
vgrG
Putative RHS accessory genetic element; Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 2.8e-128, 53.96% id in 606 aa, and to Yersinia pestis putative RHS accessory genetic element ypo3606 or y0268 SWALL:Q8ZB23 (EMBL:AJ414158) (800 aa) fasta scores: E(): 1.7e-123, 51.18% id in 633 aa.
      
 0.414
tyrA
Similar to Escherichia coli T-protein [includes: chorismate mutase and prephenate dehydrogenase] TyrA or b2600 SWALL:TYRA_ECOLI (SWALL:P07023) (373 aa) fasta scores: E(): 1.6e-123, 87.13% id in 373 aa.
  
    0.414
ECA4133
Similar to Yersinia pestis hypothetical protein ypo0128 ypo0128 or y3906 SWALL:AAM87448 (EMBL:AJ414141) (233 aa) fasta scores: E(): 7.3e-52, 56.22% id in 233 aa, and to Salmonella typhi putative competence protein sty4286 SWALL:Q8Z222 (EMBL:AL627281) (227 aa) fasta scores: E(): 7.7e-46, 53.21% id in 233 aa.
   
    0.414
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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