STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgsACDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; This protein catalyzes the committed step to the synthesis of the acidic phospholipids; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (182 aa)    
Predicted Functional Partners:
cdsA
Phosphatidate cytidylyltransferase; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phosphatidate cytidylyltransferase cdsa or cds or b0175 or z0186 or ecs0177 or sf0165 SWALL:CDSA_ECOLI (SWALL:P06466) (249 aa) fasta scores: E(): 2.5e-74, 74.08% id in 247 aa; Belongs to the CDS family.
 
  
 0.949
pgpA
Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).
 
  
 0.946
pgpB
Phosphatidylglycerophosphatase B; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phosphatidylglycerophosphatase B PgpB or b1278 or z2529 or ecs1851 or sf1282 SWALL:PGPB_ECOLI (SWALL:P18201) (254 aa) fasta scores: E(): 6.1e-68, 61.75% id in 251 aa.
  
 
 0.926
pssA
Similar to Escherichia coli cdp-diacylglycerol--serine O-phosphatidyltransferase PssA or Pss or b2585 SWALL:PSS_ECOLI (SWALL:P23830) (451 aa) fasta scores: E(): 6.3e-133, 72.12% id in 452 aa.
    
 0.922
ECA3261
Similar to Yersinia pestis putative membrane protein ypo2924 SWALL:Q8ZCP9 (EMBL:AJ414154) (215 aa) fasta scores: E(): 1.7e-62, 74.27% id in 206 aa, and to Salmonella typhimurium putatative phosphoserine phosphatase yfhb or stm2569 SWALL:Q8ZN27 (EMBL:AE008817) (211 aa) fasta scores: E(): 3e-62, 71.01% id in 207 aa.
    
 0.911
cdh
Similar to Escherichia coli CDP-diacylglycerol pyrophosphatase Cdh or b3918 SWALL:CDH_ECOLI (SWALL:P06282) (251 aa) fasta scores: E(): 7.1e-40, 43.65% id in 252 aa.
     
  0.900
rodZ
Putative DNA-binding protein; Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis.
  
    0.824
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
     
 0.754
folD
Bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
  
 0.636
expA
Two-component response regulator; Similar to Erwinia carotovora ExpA protein SWALL:O50326 (EMBL:X95564) (218 aa) fasta scores: E(): 1.3e-77, 98.62% id in 218 aa, and to Escherichia coli, and Shigella flexneri response regulator UvrY or b1914 or sf1957 SWALL:UVRY_ECOLI (SWALL:P07027) (218 aa) fasta scores: E(): 3.5e-65, 83.87% id in 217 aa. The Erwinia carotovora ExpA is involved in the global control of virulence.
     
 0.623
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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