STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2883Similar to Yersinia pestis hypothetical protein Ypo1864 SWALL:Q8ZF54 (EMBL:AJ414150) (74 aa) fasta scores: E(): 2.3e-16, 67.56% id in 74 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yecf or stm1949 or sty2157 SWALL:Q8XEK4 (EMBL:AE008786) (74 aa) fasta scores: E(): 7.4e-16, 62.16% id in 74 aa. (74 aa)    
Predicted Functional Partners:
ECA0637
Similar to Escherichia coli hypothetical protein YqjK SWALL:YQJK_ECOLI (SWALL:Q47710) (99 aa) fasta scores: E(): 1.5e-17, 47.36% id in 95 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein YqjK SWALL:Q8XGR1 (EMBL:AE008848) (99 aa) fasta scores: E(): 4.6e-17, 45.26% id in 95 aa.
  
     0.774
holE
DNA polymerase III, theta subunit; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri DNA polymerase III, theta subunit HolE or b1842 or c2252 or z2891 or ecs2552 or sf1852.1 SWALL:HOLE_ECOLI (SWALL:P28689) (76 aa) fasta scores: E(): 8.7e-18, 67.1% id in 76 aa.
  
     0.774
cpxP
Putative stress resistance protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri periplasmic protein cpxp precursor CpxP or b3913/b3914 or c4865 or sf3992 SWALL:CPXP_ECOLI (SWALL:P32158) (166 aa) fasta scores: E(): 6.2e-20, 50% id in 140 aa.
  
     0.774
ECA0045
Putative virulence-associated outer membrane protein; Similar to Salmonella typhimurium resistance to complement killing Rck or pslt009 SWALL:Q04817 (EMBL:L08613) (185 aa) fasta scores: E(): 7.9e-27, 44.68% id in 188 aa, and to Salmonella typhimurium virulence membrane protein PagC precursor or stm1246 SWALL:PAGC_SALTY (SWALL:P23988) (185 aa) fasta scores: E(): 3.5e-26, 45.05% id in 182 aa.
  
     0.773
ECA2203
Similar to Yersinia pestis putative exported protein ypo2305 or y2136 SWALL:Q8ZE77 (EMBL:AJ414151) (317 aa) fasta scores: E(): 2.4e-78, 69.9% id in 319 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1625 SWALL:AAN43208 (EMBL:AE015183) (314 aa) fasta scores: E(): 8.2e-74, 67.82% id in 317 aa.
  
     0.773
tus
Similar to Escherichia coli DNA replication terminus site-binding protein Tus or Tau or b1610 SWALL:TUS_ECOLI (SWALL:P16525) (309 aa) fasta scores: E(): 1.9e-57, 49.34% id in 306 aa, and to Yersinia pestis DNA replication terminus site-binding protein Tus or ypo2265 or y2107 SWALL:TUS_YERPE (SWALL:Q9L6X9) (311 aa) fasta scores: E(): 4e-68, 57.79% id in 308 aa.
  
     0.773
ECA2305
Similar to Yersinia pestis putative membrane protein ypo2199 or y2042 SWALL:Q8ZEH4 (EMBL:AJ414151) (256 aa) fasta scores: E(): 8.8e-50, 55.42% id in 249 aa, and to Salmonella typhimurium putative inner membrane protein ycic or stm1734 SWALL:Q8ZP49 (EMBL:AE008777) (247 aa) fasta scores: E(): 9.6e-49, 55.82% id in 249 aa.
  
     0.773
ompX
Outer membrane protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri outer membrane protein X precursor OmpX or b0814 or c0900 or z1036 or ecs0892 or sf0765 SWALL:OMPX_ECOLI (SWALL:P36546) (171 aa) fasta scores: E(): 9.1e-40, 66.47% id in 173 aa.
  
     0.773
atpI
ATP synthase protein I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ATP synthase protein I AtpI or UncI or b3739 or c4667 or sf3819 SWALL:ATPZ_ECOLI (SWALL:P03808) (125 aa) fasta scores: E(): 5.7e-21, 57.02% id in 121 aa.
  
     0.773
ECA1810
Similar to Yersinia pestis putative lipoprotein ypo1612 SWALL:Q8ZFS6 (EMBL:AJ414149) (129 aa) fasta scores: E(): 1e-15, 44.53% id in 119 aa, and to Shigella flexneri orf, conserved hypothetical protein ycfl or sf1108 SWALL:AAN42726 (EMBL:AE015138) (125 aa) fasta scores: E(): 1.5e-14, 38.88% id in 126 aa.
  
     0.772
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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