STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2891Conserved hypothetical protein; Similar to Escherichia coli, and Salmonella typhimurium yebb protein yebb or ydjA SWALL:Q9JMR6 (EMBL:AP001918) (299 aa) fasta scores: E(): 6.9e-19, 42.69% id in 178 aa, and to Vibrio vulnificus predicted nucleotide-binding protein vv12473 SWALL:AAO10837 (EMBL:AE016805) (299 aa) fasta scores: E(): 7.4e-27, 48.2% id in 195 aa. (270 aa)    
Predicted Functional Partners:
ECA2892
Hypothetical protein; Weakly similar to Deinococcus radiodurans hypothetical protein Dra0366 dra0366 SWALL:Q9RYF2 (EMBL:AE001863) (172 aa) fasta scores: E(): 3e-05, 39.62% id in 106 aa, and to Streptococcus mutans hypothetical protein smu.804 SWALL:AAN58522 (EMBL:AE014921) (404 aa) fasta scores: E(): 0.68, 26.45% id in 155 aa.
       0.650
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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