STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2918Putative phage-related protein; Similar to Bacteriophage P4 hypothetical 9.7 kDa protein SWALL:Y9K_BPP4 (SWALL:P12552) (88 aa) fasta scores: E(): 5.4e-05, 42.3% id in 52 aa, and to Yersinia pseudotuberculosis DNA-binding protein SWALL:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 1.5e-06, 45.45% id in 55 aa. (72 aa)    
Predicted Functional Partners:
ECA2917
Hypothetical protein; No significant database matches.
       0.671
ECA0969
Similar to Yersinia pestis putative tetr-family regulatory protein ypo3840 or y0390 SWALL:AAM83979 (EMBL:AJ414159) (228 aa) fasta scores: E(): 1.4e-33, 71.36% id in 213 aa, and to Rhizobium loti transcriptional regulator mll3386 SWALL:Q98GC7 (EMBL:AP003001) (219 aa) fasta scores: E(): 3.2e-30, 48.66% id in 187 aa.
  
     0.614
ECA2754
Putative prophage primase; Similar to Escherichia coli O157:H7 alpha replication protein of prophage cp-933i z0339 or ecs0303 SWALL:Q8X7I5 (EMBL:AE005204) (796 aa) fasta scores: E(): 1.3e-10, 28.27% id in 633 aa, and to Pasteurella multocida hypothetical protein Pm1782 SWALL:Q9CK52 (EMBL:AE006215) (725 aa) fasta scores: E(): 9.7e-95, 45.25% id in 590 aa, and to Bacteriophage P4 DNA primase SWALL:Q8LTT9 (EMBL:AF509493) (362 aa) fasta scores: E(): 2.3e-41, 47.26% id in 347 aa.
 
  
 0.513
ECA2916
Hypothetical protein; No significant database matches.
       0.490
ECA2919
Similar to Salmonella typhi hypothetical protein t0869 SWALL:AAO68551 (EMBL:AE016837) (287 aa) fasta scores: E(): 8.5e-72, 70% id in 280 aa.
       0.490
ECA2879
Integrase; Similar to Yersinia pestis putative prophage P4 integrase IntB or y0749 SWALL:AAM84336 (EMBL:AE013677) (431 aa) fasta scores: E(): 1.7e-120, 72.53% id in 415 aa, and to Shigella flexneri Int or sf2964 SWALL:AAN44445 (EMBL:AE015309) (420 aa) fasta scores: E(): 3.5e-112, 67.95% id in 415 aa; Belongs to the 'phage' integrase family.
 
     0.487
intB
Phage integrase; Similar to Yersinia pestis integrase IntB or ypo3438 SWALL:Q8ZBH6 (EMBL:AJ414157) (419 aa) fasta scores: E(): 2.4e-97, 58.15% id in 423 aa, and to Shigella flexneri integrase IntB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 2.4e-90, 58.45% id in 402 aa; Belongs to the 'phage' integrase family.
 
     0.484
intB-2
Integrase; Similar to Yersinia pestis integrase IntB or ypo3438 SWALL:Q8ZBH6 (EMBL:AJ414157) (419 aa) fasta scores: E(): 6.6e-96, 56.5% id in 423 aa, and to Shigella flexneri integrase IntB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 3.7e-90, 57.46% id in 402 aa; Belongs to the 'phage' integrase family.
 
     0.483
ECA2920
Putative membrane protein; No significant database matches.
       0.477
ECA2182
Prophage integrase; Similar to Escherichia coli O157:H7 integrase protein for prophage cp-933i z0324 or ecs0289 SWALL:Q8X7K7 (EMBL:AE005203) (410 aa) fasta scores: E(): 6.8e-46, 40.35% id in 337 aa, and to Yersinia pestis integrase int or ypo0887 or y3271 SWALL:AAM86821 (EMBL:AJ414145) (404 aa) fasta scores: E(): 5.8e-48, 41.12% id in 338 aa; Belongs to the 'phage' integrase family.
 
     0.476
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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