STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2922Similar to Escherichia coli hypothetical transcriptional regulator ycjz or b1328 SWALL:YCJZ_ECOLI (SWALL:P77333) (299 aa) fasta scores: E(): 1e-73, 66.21% id in 296 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein blr5548 SWALL:BAC50813 (EMBL:AP005955) (297 aa) fasta scores: E(): 1.3e-54, 54.39% id in 296 aa. (297 aa)    
Predicted Functional Partners:
sftR
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 1.2e-43, 42.19% id in 301 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein sdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 1.3e-30, 36.53% id in 312 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.534
sftR-2
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 6.9e-58, 50.82% id in 303 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein SdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 2.3e-29, 37.58% id in 314 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.529
ECA2923
Similar to Escherichia coli O157:H7 putative oxidoreductase z0369 or ecs0331 SWALL:Q8X6H2 (EMBL:AE005207) (380 aa) fasta scores: E(): 1.5e-79, 58.44% id in 373 aa, and to Oceanobacillus iheyensis NADH-dependent flavin oxidoreductase ob3315 SWALL:BAC15271 (EMBL:AP004604) (373 aa) fasta scores: E(): 3.6e-62, 47.97% id in 371 aa.
       0.521
nac
Partial CDS. Similar to the N-terminal region of Escherichia coli nitrogen assimilation regulatory protein Nac or b1988 SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 1.4e-23, 77.77% id in 90 aa.
  
     0.516
ECA3952
Similar to Pseudomonas putida transcriptional regulator, LysR family pp0698 SWALL:AAN66323 (EMBL:AE016776) (305 aa) fasta scores: E(): 3.1e-76, 64.93% id in 288 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator gcva or b2808 or c3378 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 6.4e-26, 33.67% id in 297 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.507
ECA2231
Similar to Escherichia coli O6 hypothetical protein ycjy c1801 SWALL:Q8FHQ8 (EMBL:AE016760) (310 aa) fasta scores: E(): 3.8e-49, 47.11% id in 295 aa, and to Vibrio parahaemolyticus hypothetical protein vp1677 SWALL:BAC59940 (EMBL:AP005078) (339 aa) fasta scores: E(): 1.9e-45, 46.23% id in 292 aa.
 
    0.496
nac-2
Similar to Escherichia coli nitrogen assimilation regulatory protein Nac or b1988 SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 6.6e-56, 52.44% id in 307 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.491
ECA0916
LysR-family transcriptional regulator; Similar to Listeria innocua transcription activator of glutamate synthase operon GltC SWALL:Q92AS3 (EMBL:AL596170) (295 aa) fasta scores: E(): 8.3e-15, 25.25% id in 293 aa, and to Acinetobacter calcoaceticus ben and cat operon transcriptional regulator BenM SWALL:BENM_ACICA (SWALL:O68014) (304 aa) fasta scores: E(): 1.3e-11, 25% id in 272 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.486
ECA1085
LysR-family transcriptional regulator; Similar to Ralstonia solanacearum probable transcription regulator protein rsp1267 or rs05312 SWALL:Q8XQG0 (EMBL:AL646083) (294 aa) fasta scores: E(): 7.6e-52, 47.27% id in 294 aa, and to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1077 SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): 2.4e-46, 44.71% id in 293 aa.
  
     0.467
ECA3202
LysR-family transcriptional regulator; Similar to Ralstonia solanacearum probable DNA-binding transcriptional regulatory transcription regulator protein rsc1196 or rs05728 SWALL:Q8Y048 (EMBL:AL646063) (306 aa) fasta scores: E(): 3.9e-42, 42.76% id in 297 aa, and to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1077 SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): 2.7e-38, 39.51% id in 291 aa.
  
     0.462
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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