Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA2933Similar to Agrobacterium tumefaciens short-chain dehydrogenase atu4220 or agr_l_1280 SWALL:Q8U879 (EMBL:AE009351) (291 aa) fasta scores: E(): 8.4e-41, 46.8% id in 250 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase pa0658 SWALL:Q9I5R3 (EMBL:AE004500) (266 aa) fasta scores: E(): 8.5e-26, 37.3% id in 252 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa)    
Predicted Functional Partners:
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 0.825
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 0.805
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
  0.755
ECA2932
Similar to Ralstonia solanacearum putative drug efflux lipoprotein rsc3208 or rs02424 SWALL:Q8XUI0 (EMBL:AL646074) (486 aa) fasta scores: E(): 4e-119, 69.19% id in 487 aa, and to Xanthomonas campestris outer membrane protein oprn or xcc0419 SWALL:Q8PDC1 (EMBL:AE012139) (490 aa) fasta scores: E(): 9.1e-110, 65.09% id in 487 aa.
       0.556
ECA2931
Similar to Pseudomonas putida transcriptional regulator, TetR family pp3300 SWALL:AAN68907 (EMBL:AE016786) (204 aa) fasta scores: E(): 4.3e-53, 65.19% id in 204 aa, and to Xylella fastidiosa transcriptional regulator xf2085 SWALL:Q9PBQ5 (EMBL:AE004024) (205 aa) fasta scores: E(): 1.8e-50, 64.87% id in 205 aa.
 
     0.485
ECA2289
Similar to Yersinia pestis putative short chain dehydrogenase ypo2215 SWALL:Q8ZEF8 (EMBL:AJ414151) (253 aa) fasta scores: E(): 4.9e-73, 75.49% id in 253 aa, and to Salmonella typhimurium, and Salmonella typhi putative oxoacyl- ycik or stm1717 or sty1333 SWALL:Q8XGU5 (EMBL:AE008776) (253 aa) fasta scores: E(): 1.2e-71, 74.3% id in 253 aa.
  
 
  0.442
ECA2346
Similar to Salmonella typhi putative oxidoreductase sty1828 SWALL:Q8Z6F0 (EMBL:AL627271) (285 aa) fasta scores: E(): 1.1e-72, 63.7% id in 281 aa, and to Escherichia coli hypothetical protein yeae yeae or b1781 SWALL:YEAE_ECOLI (SWALL:P76234) (284 aa) fasta scores: E(): 4.1e-72, 63.7% id in 281 aa.
  
 
 0.437
ECA3558
Short chain dehydrogenase; Similar to Photorhabdus luminescens Orf29 SWALL:AAO17195 (EMBL:AF346500) (248 aa) fasta scores: E(): 6e-74, 81.04% id in 248 aa, and to Escherichia coli hypothetical oxidoreductase ygff or b2902 SWALL:YGFF_ECOLI (SWALL:P52037) (247 aa) fasta scores: E(): 1.5e-55, 63.26% id in 245 aa.
  
 
  0.434
ECA2930
HlyD-family secretion protein; Similar to Pseudomonas putida RND efflux membrane fusion protein pp3301 SWALL:AAN68908 (EMBL:AE016786) (367 aa) fasta scores: E(): 2.8e-81, 70.1% id in 368 aa, and to Xylella fastidiosa component of multidrug efflux system xf2084 SWALL:Q9PBQ6 (EMBL:AE004023) (368 aa) fasta scores: E(): 3.9e-75, 63.95% id in 369 aa; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.406
ECA3767
Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase pa4162 SWALL:Q9HWL9 (EMBL:AE004832) (238 aa) fasta scores: E(): 8.7e-18, 39.58% id in 240 aa, and to Bradyrhizobium japonicum Blr3403 protein blr3403 SWALL:BAC48668 (EMBL:AP005947) (242 aa) fasta scores: E(): 4.5e-18, 35.19% id in 233 aa.
  
 
  0.403
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.