STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifLSimilar to Klebsiella pneumoniae nitrogen fixation regulatory protein NifL SWALL:NIFL_KLEPN (SWALL:P06772) (495 aa) fasta scores: E(): 2e-130, 66.46% id in 495 aa, and to Pantoea agglomerans NifL protein NifL SWALL:Q57340 (EMBL:X99694) (495 aa) fasta scores: E(): 5.8e-122, 61.21% id in 495 aa. (495 aa)    
Predicted Functional Partners:
nifA
Similar to Klebsiella pneumoniae nif-specific regulatory protein NifA SWALL:NIFA_KLEPN (SWALL:P03027) (524 aa) fasta scores: E(): 3.2e-156, 77.37% id in 526 aa, and to Enterobacter agglomerans nif-specific regulatory protein NifA SWALL:NIFA_ENTAG (SWALL:P54930) (518 aa) fasta scores: E(): 4.3e-144, 71.59% id in 528 aa.
 
     0.833
nifQ
Nitrogen fixation protein; Similar to Pantoea agglomerans NifQ protein NifQ SWALL:Q52074 (EMBL:X99694) (171 aa) fasta scores: E(): 1.7e-37, 59.64% id in 171 aa, and to Klebsiella pneumoniae NifQ protein NifQ SWALL:NIFQ_KLEPN (SWALL:P10392) (167 aa) fasta scores: E(): 1.8e-33, 58.08% id in 167 aa.
 
  
 0.729
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
 
 
 0.636
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
 
 
 0.624
nifT
Nitrogen fixation protein; Similar to Klebsiella pneumoniae NifT protein NifT SWALL:NIFT_KLEPN (SWALL:P09134) (72 aa) fasta scores: E(): 5e-18, 66.66% id in 72 aa, and to Pantoea agglomerans NifT protein NifT SWALL:Q52062 (EMBL:X99694) (71 aa) fasta scores: E(): 6.3e-17, 63.38% id in 71 aa.
  
     0.607
nifY
Nitrogen fixation protein; Similar to Klebsiella pneumoniae NifY protein NifY SWALL:NIFY_KLEPN (SWALL:P09135) (229 aa) fasta scores: E(): 2e-52, 60.76% id in 209 aa, and to Pantoea agglomerans NifY protein NifY SWALL:Q52063 (EMBL:X99694) (224 aa) fasta scores: E(): 4.9e-51, 58.22% id in 225 aa.
  
   
 0.596
nifX
Nitrogen fixation protein; Similar to Pantoea agglomerans NifX protein NifX SWALL:Q52066 (EMBL:X99694) (154 aa) fasta scores: E(): 1.1e-37, 61.84% id in 152 aa, and to Klebsiella pneumoniae NifX protein NifX SWALL:NIFX_KLEPN (SWALL:P09136) (156 aa) fasta scores: E(): 2.9e-36, 62.74% id in 153 aa.
  
   
 0.581
nifB
Similar to Klebsiella pneumoniae femo cofactor biosynthesis protein NifB SWALL:NIFB_KLEPN (SWALL:P10390) (468 aa) fasta scores: E(): 8.2e-132, 70.08% id in 468 aa, and to Pantoea agglomerans NifB protein NifB SWALL:Q57037 (EMBL:X99694) (465 aa) fasta scores: E(): 1e-124, 69.02% id in 452 aa.
 
   
 0.548
ECA1568
Putative chemotaxis signal transduction protein; Similar to Vibrio fischeri CheV SWALL:AAL86625 (EMBL:AY079167) (306 aa) fasta scores: E(): 1.6e-26, 34.36% id in 323 aa, and to Salmonella typhimurium putative chemotaxis signal transduction protein stm2314 SWALL:Q8ZNE6 (EMBL:AE008803) (333 aa) fasta scores: E(): 8.2e-81, 70.44% id in 318 aa.
 
 
 0.545
fliM
Flagellar motor switch protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.542
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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