STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifMNitrogen fixation protein; Similar to Klebsiella pneumoniae protein NifM SWALL:NIFM_KLEPN (SWALL:P08534) (266 aa) fasta scores: E(): 2.1e-38, 43.82% id in 267 aa, and to Pantoea agglomerans NifM protein NifM SWALL:Q52073 (EMBL:X99694) (264 aa) fasta scores: E(): 7.7e-36, 40.54% id in 259 aa. (265 aa)    
Predicted Functional Partners:
nifZ
Nitrogen fixation protein; Similar to Klebsiella pneumoniae NifZ protein NifZ SWALL:NIFZ_KLEPN (SWALL:P08533) (148 aa) fasta scores: E(): 3.6e-33, 57.24% id in 145 aa, and to Pantoea agglomerans NifZ protein NifZ SWALL:Q52072 (EMBL:X99694) (147 aa) fasta scores: E(): 5.6e-30, 56.55% id in 145 aa.
    
 0.897
nifV
Homocitrate synthase; Similar to Klebsiella pneumoniae homocitrate synthase NifV SWALL:NIFV_KLEPN (SWALL:P05345) (381 aa) fasta scores: E(): 1.8e-100, 68.94% id in 380 aa, and to Enterobacter agglomerans homocitrate synthase NifV SWALL:NIFV_ENTAG (SWALL:Q52070) (400 aa) fasta scores: E(): 1.6e-95, 68.4% id in 364 aa; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
   
 0.813
nifS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
    0.793
nifW
Similar to Klebsiella pneumoniae nitrogenase stabilizing/protective protein NifW SWALL:NIFW_KLEPN (SWALL:P09137) (86 aa) fasta scores: E(): 4.7e-19, 70.13% id in 77 aa, and to Enterobacter agglomerans nitrogenase stabilizing/protective protein NifW SWALL:NIFW_ENTAG (SWALL:Q52071) (112 aa) fasta scores: E(): 2.5e-12, 53.84% id in 78 aa.
       0.791
ppiC
Peptidyl-prolyl cis-trans isomerase C; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 peptidyl-prolyl cis-trans isomerase C PpiC or ParvA or b3775 or c4697 or z5286 or ecs4709 SWALL:PPIC_ECOLI (SWALL:P39159) (92 aa) fasta scores: E(): 2e-25, 71.73% id in 92 aa.
  
     0.759
nifU
Nitrogen fixation protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
  
 0.729
narJ
Similar to Escherichia coli, and Escherichia coli O157:H7 respiratory nitrate reductase 1 delta chain NarJ or b1226 or z2003 or ecs1731 SWALL:NARJ_ECOLI (SWALL:P11351) (236 aa) fasta scores: E(): 8.1e-56, 62.18% id in 238 aa.
  
    0.658
narI
Similar to Escherichia coli respiratory nitrate reductase 1 gamma chain NarI or ChlI or b1227 SWALL:NARI_ECOLI (SWALL:P11350) (225 aa) fasta scores: E(): 5.6e-71, 77.67% id in 224 aa.
  
  
 0.633
narH
Similar to Escherichia coli respiratory nitrate reductase 1 beta chain NarH or b1225 SWALL:NARH_ECOLI (SWALL:P11349) (512 aa) fasta scores: E(): 6.2e-178, 86.74% id in 513 aa.
  
    0.630
narG
Similar to Escherichia coli respiratory nitrate reductase 1 alpha chain NarG or NarC or BisD or b1224 SWALL:NARG_ECOLI (SWALL:P09152) (1246 aa) fasta scores: E(): 0, 83.77% id in 1245 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.620
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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