Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nifWSimilar to Klebsiella pneumoniae nitrogenase stabilizing/protective protein NifW SWALL:NIFW_KLEPN (SWALL:P09137) (86 aa) fasta scores: E(): 4.7e-19, 70.13% id in 77 aa, and to Enterobacter agglomerans nitrogenase stabilizing/protective protein NifW SWALL:NIFW_ENTAG (SWALL:Q52071) (112 aa) fasta scores: E(): 2.5e-12, 53.84% id in 78 aa. (85 aa)    
Predicted Functional Partners:
nifM
Nitrogen fixation protein; Similar to Klebsiella pneumoniae protein NifM SWALL:NIFM_KLEPN (SWALL:P08534) (266 aa) fasta scores: E(): 2.1e-38, 43.82% id in 267 aa, and to Pantoea agglomerans NifM protein NifM SWALL:Q52073 (EMBL:X99694) (264 aa) fasta scores: E(): 7.7e-36, 40.54% id in 259 aa.
     
 0.807
nifZ
Nitrogen fixation protein; Similar to Klebsiella pneumoniae NifZ protein NifZ SWALL:NIFZ_KLEPN (SWALL:P08533) (148 aa) fasta scores: E(): 3.6e-33, 57.24% id in 145 aa, and to Pantoea agglomerans NifZ protein NifZ SWALL:Q52072 (EMBL:X99694) (147 aa) fasta scores: E(): 5.6e-30, 56.55% id in 145 aa.
     
 0.807
nifV
Homocitrate synthase; Similar to Klebsiella pneumoniae homocitrate synthase NifV SWALL:NIFV_KLEPN (SWALL:P05345) (381 aa) fasta scores: E(): 1.8e-100, 68.94% id in 380 aa, and to Enterobacter agglomerans homocitrate synthase NifV SWALL:NIFV_ENTAG (SWALL:Q52070) (400 aa) fasta scores: E(): 1.6e-95, 68.4% id in 364 aa; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.773
nifS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
       0.752
nifU
Nitrogen fixation protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
     
 0.663
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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