STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2950TetR-family regulatory protein; Similar to Xanthomonas campestris transcriptional regulator xcc0044 SWALL:Q8PED7 (EMBL:AE012097) (189 aa) fasta scores: E(): 7.7e-20, 49.6% id in 125 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2484 SWALL:Q9I0Z8 (EMBL:AE004676) (204 aa) fasta scores: E(): 5.9e-19, 36.68% id in 199 aa. (202 aa)    
Predicted Functional Partners:
ECA2951
Probable transporter; Similar to Pseudomonas syringae major facilitator family transporter pspto3068 SWALL:AAO56557 (EMBL:AE016867) (375 aa) fasta scores: E(): 1.1e-88, 65.14% id in 373 aa, and to Pseudomonas aeruginosa probable mfs transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.6e-73, 54.02% id in 385 aa.
 
     0.744
ECA3505
Putative hydrolase; Similar to Bradyrhizobium japonicum Blr6576 protein Blr6576 SWALL:BAC51841 (EMBL:AP005959) (283 aa) fasta scores: E(): 3.7e-64, 55.43% id in 285 aa, and to Streptomyces coelicolor putative hydrolase sco0461 or scf76.01 or scf51a.39 SWALL:CAD55442 (EMBL:AL939105) (289 aa) fasta scores: E(): 5.3e-53, 49.64% id in 280 aa.
 
   
 0.506
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
   
 0.488
nifX
Nitrogen fixation protein; Similar to Pantoea agglomerans NifX protein NifX SWALL:Q52066 (EMBL:X99694) (154 aa) fasta scores: E(): 1.1e-37, 61.84% id in 152 aa, and to Klebsiella pneumoniae NifX protein NifX SWALL:NIFX_KLEPN (SWALL:P09136) (156 aa) fasta scores: E(): 2.9e-36, 62.74% id in 153 aa.
       0.409
nifN
Similar to Klebsiella pneumoniae nitrogenase iron-molybdenum cofactor biosynthesis protein NifN nifN SWALL:NIFN_KLEPN (SWALL:P08738) (461 aa) fasta scores: E(): 1.2e-122, 68.26% id in 460 aa, and to Pantoea agglomerans NifN protein NifN SWALL:Q52065 (EMBL:X99694) (461 aa) fasta scores: E(): 4.4e-130, 74.1% id in 448 aa; Belongs to the NifD/NifK/NifE/NifN family.
       0.409
nifE
Similar to Klebsiella pneumoniae nitrogenase iron-molybdenum cofactor biosynthesis protein NifE SWALL:NIFE_KLEPN (SWALL:P08737) (457 aa) fasta scores: E(): 1.9e-156, 86.62% id in 456 aa, and to Pantoea agglomerans NifE protein NifE SWALL:Q52064 (EMBL:X99694) (457 aa) fasta scores: E(): 7.8e-147, 80.04% id in 456 aa; Belongs to the NifD/NifK/NifE/NifN family.
       0.409
ECA3886
Putative membrane protein; Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa.
    
 
 0.407
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.