Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
ECA0705 | ECA2951 | Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa. | Probable transporter; Similar to Pseudomonas syringae major facilitator family transporter pspto3068 SWALL:AAO56557 (EMBL:AE016867) (375 aa) fasta scores: E(): 1.1e-88, 65.14% id in 373 aa, and to Pseudomonas aeruginosa probable mfs transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.6e-73, 54.02% id in 385 aa. | 0.432 |
ECA2950 | ECA2951 | TetR-family regulatory protein; Similar to Xanthomonas campestris transcriptional regulator xcc0044 SWALL:Q8PED7 (EMBL:AE012097) (189 aa) fasta scores: E(): 7.7e-20, 49.6% id in 125 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2484 SWALL:Q9I0Z8 (EMBL:AE004676) (204 aa) fasta scores: E(): 5.9e-19, 36.68% id in 199 aa. | Probable transporter; Similar to Pseudomonas syringae major facilitator family transporter pspto3068 SWALL:AAO56557 (EMBL:AE016867) (375 aa) fasta scores: E(): 1.1e-88, 65.14% id in 373 aa, and to Pseudomonas aeruginosa probable mfs transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.6e-73, 54.02% id in 385 aa. | 0.744 |
ECA2951 | ECA0705 | Probable transporter; Similar to Pseudomonas syringae major facilitator family transporter pspto3068 SWALL:AAO56557 (EMBL:AE016867) (375 aa) fasta scores: E(): 1.1e-88, 65.14% id in 373 aa, and to Pseudomonas aeruginosa probable mfs transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.6e-73, 54.02% id in 385 aa. | Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa. | 0.432 |
ECA2951 | ECA2950 | Probable transporter; Similar to Pseudomonas syringae major facilitator family transporter pspto3068 SWALL:AAO56557 (EMBL:AE016867) (375 aa) fasta scores: E(): 1.1e-88, 65.14% id in 373 aa, and to Pseudomonas aeruginosa probable mfs transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.6e-73, 54.02% id in 385 aa. | TetR-family regulatory protein; Similar to Xanthomonas campestris transcriptional regulator xcc0044 SWALL:Q8PED7 (EMBL:AE012097) (189 aa) fasta scores: E(): 7.7e-20, 49.6% id in 125 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2484 SWALL:Q9I0Z8 (EMBL:AE004676) (204 aa) fasta scores: E(): 5.9e-19, 36.68% id in 199 aa. | 0.744 |