STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2961Similar to Brucella abortus putative ABC transporter permease protein c batn1953.orf22 SWALL:Q8VQK5 (EMBL:AF454951) (296 aa) fasta scores: E(): 6.2e-46, 43.86% id in 269 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3267 or agr_l_3102 SWALL:Q8UAV0 (EMBL:AE009256) (291 aa) fasta scores: E(): 3.6e-45, 44.44% id in 270 aa. (287 aa)    
Predicted Functional Partners:
ECA2960
Similar to Rhizobium loti probable peptide ABC transporter ATP-binding abc transporter protein msi192 SWALL:Q8KJF3 (EMBL:AL672113) (335 aa) fasta scores: E(): 1.6e-55, 52.81% id in 320 aa, and to Bacillus halodurans oligopeptide ABC transporter appd or bh0350 SWALL:Q9KFX0 (EMBL:AP001508) (329 aa) fasta scores: E(): 6.5e-57, 53.53% id in 325 aa.
 0.986
ECA2962
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3268 or agr_l_3101 SWALL:Q8UAU9 (EMBL:AE009256) (313 aa) fasta scores: E(): 1.6e-50, 47.72% id in 308 aa, and to Bradyrhizobium japonicum ABC transporter permease protein blr3342 SWALL:BAC48607 (EMBL:AP005947) (313 aa) fasta scores: E(): 6.3e-50, 47.07% id in 308 aa.
 
 0.974
dppD
Dipeptide transport ATP-binding protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri dipeptide transport ATP-binding protein DppD or b3541 or z4958 or ecs4421 or sf3576 SWALL:DPPD_ECOLI (SWALL:P37314) (327 aa) fasta scores: E(): 1.9e-103, 88.07% id in 327 aa; Belongs to the ABC transporter superfamily.
 0.963
ECA2963
Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3269 or agr_l_3099 SWALL:Q8UAU8 (EMBL:AE009256) (517 aa) fasta scores: E(): 1.6e-43, 31.66% id in 518 aa, and to Bradyrhizobium japonicum ABC transporter peptide-binding protein blr0308 SWALL:BAC45573 (EMBL:AP005936) (518 aa) fasta scores: E(): 7.8e-41, 30.42% id in 516 aa.
 
  0.953
oppD
Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD or stm1743 SWALL:OPPD_SALTY (SWALL:P04285) (335 aa) fasta scores: E(): 3.4e-102, 86.29% id in 321 aa; Belongs to the ABC transporter superfamily.
 0.910
ECA4073
ABC transporter ATP binding protein; Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3457 or agr_l_2743 SWALL:Q8UAB7 (EMBL:AE009276) (278 aa) fasta scores: E(): 6.5e-62, 65.07% id in 272 aa, and to Rhizobium meliloti putative dipeptide transport ATP-binding ABC transporter protein dppd2 or r02410 or smc01528 SWALL:Q92N29 (EMBL:AL591790) (277 aa) fasta scores: E(): 3e-58, 61.99% id in 271 aa.
 0.903
ECA0136
Similar to Escherichia coli hypothetical ABC transporter permease protein ylic or b0831 SWALL:YLIC_ECOLI (SWALL:P75798) (306 aa) fasta scores: E(): 4.3e-64, 52.94% id in 306 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1381 or rs04750 SWALL:Q8XZL4 (EMBL:AL646064) (307 aa) fasta scores: E(): 5.6e-63, 54.6% id in 304 aa.
 
 0.892
ECA1007
Similar to Rhizobium meliloti probable ABC transporter, permease protein ra1138 or sma2085 SWALL:Q92XV2 (EMBL:AE007299) (328 aa) fasta scores: E(): 1.3e-81, 66.25% id in 323 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3434 or agr_l_2785 SWALL:Q8UAE0 (EMBL:AE009274) (347 aa) fasta scores: E(): 3.1e-79, 64.92% id in 325 aa.
 
 0.892
gsiC
Putative ABC transporter permease protein; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane.
 
 0.892
ECA4422
ABC transporter permease protein; Similar to Bacillus subtilis oligopeptide transport system permease protein AppB SWALL:APPB_BACSU (SWALL:P42062) (317 aa) fasta scores: E(): 2.2e-41, 37.46% id in 323 aa, and to Ralstonia solanacearum probable dipeptide transmembrane ABC transporter protein DppB2 or rsc1882 or rs03442 SWALL:Q8XY81 (EMBL:AL646067) (328 aa) fasta scores: E(): 4.7e-78, 61.12% id in 319 aa.
 
 0.892
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.