STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2962Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3268 or agr_l_3101 SWALL:Q8UAU9 (EMBL:AE009256) (313 aa) fasta scores: E(): 1.6e-50, 47.72% id in 308 aa, and to Bradyrhizobium japonicum ABC transporter permease protein blr3342 SWALL:BAC48607 (EMBL:AP005947) (313 aa) fasta scores: E(): 6.3e-50, 47.07% id in 308 aa. (318 aa)    
Predicted Functional Partners:
ECA2960
Similar to Rhizobium loti probable peptide ABC transporter ATP-binding abc transporter protein msi192 SWALL:Q8KJF3 (EMBL:AL672113) (335 aa) fasta scores: E(): 1.6e-55, 52.81% id in 320 aa, and to Bacillus halodurans oligopeptide ABC transporter appd or bh0350 SWALL:Q9KFX0 (EMBL:AP001508) (329 aa) fasta scores: E(): 6.5e-57, 53.53% id in 325 aa.
 
 0.964
ECA2961
Similar to Brucella abortus putative ABC transporter permease protein c batn1953.orf22 SWALL:Q8VQK5 (EMBL:AF454951) (296 aa) fasta scores: E(): 6.2e-46, 43.86% id in 269 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3267 or agr_l_3102 SWALL:Q8UAV0 (EMBL:AE009256) (291 aa) fasta scores: E(): 3.6e-45, 44.44% id in 270 aa.
  
 0.962
ECA2963
Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3269 or agr_l_3099 SWALL:Q8UAU8 (EMBL:AE009256) (517 aa) fasta scores: E(): 1.6e-43, 31.66% id in 518 aa, and to Bradyrhizobium japonicum ABC transporter peptide-binding protein blr0308 SWALL:BAC45573 (EMBL:AP005936) (518 aa) fasta scores: E(): 7.8e-41, 30.42% id in 516 aa.
 
 0.945
ECA0135
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 5.1e-44, 45.26% id in 285 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1382 or rs04665 SWALL:Q8XZL3 (EMBL:AL646064) (299 aa) fasta scores: E(): 3.3e-62, 57.71% id in 298 aa.
  
 0.843
ECA0446
Similar to Xanthomonas axonopodis ABC transporter permease OppC SWALL:Q8PP30 (EMBL:AE011717) (294 aa) fasta scores: E(): 8.7e-38, 43.26% id in 282 aa.
  
 0.842
gsiD
Putative ABC transporter permease protein; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane.
  
 0.842
ECA4074
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3458 or agr_l_2741 SWALL:Q8UAB6 (EMBL:AE009276) (295 aa) fasta scores: E(): 5.9e-75, 64.18% id in 282 aa, and to Rhizobium meliloti putative dipeptide transport system permease ABC transporter protein dppc2 or r02411 or smc01527 SWALL:Q92N28 (EMBL:AL591790) (310 aa) fasta scores: E(): 4.7e-66, 54.8% id in 312 aa.
  
 0.841
ECA4421
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 2.7e-36, 40.14% id in 274 aa, and to Ralstonia solanacearum probable dipeptide transmembrane ABC transporter protein DppC2 or rsc1883 or rs03443 SWALL:Q8XY80 (EMBL:AL646067) (311 aa) fasta scores: E(): 4.2e-68, 61.75% id in 285 aa.
  
 0.841
ECA0073
ABC transporter permease protein; Similar to Corynebacterium efficiens putative transport protein ce2332 SWALL:BAC19142 (EMBL:AP005222) (305 aa) fasta scores: E(): 2.3e-58, 62.22% id in 270 aa, and to Escherichia coli hypothetical ABC transporter permease protein YliD SWALL:YLID_ECOLI (SWALL:P75799) (303 aa) fasta scores: E(): 1.3e-33, 38.34% id in 266 aa.
  
 0.840
dppC
Dipeptide transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 6e-98, 86.33% id in 300 aa.
  
 0.830
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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