STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2967Putative dehydratase; Similar to Bradyrhizobium japonicum Bll6362 protein Bll6362 SWALL:BAC51627 (EMBL:AP005958) (477 aa) fasta scores: E(): 4.9e-07, 26.58% id in 459 aa, and to Rhizobium loti hypothetical protein Mll9010 SWALL:Q982L5 (EMBL:AP003015) (457 aa) fasta scores: E(): 5.4e-07, 26.48% id in 438 aa. (471 aa)    
Predicted Functional Partners:
ECA3784
Similar to Agrobacterium tumefaciens hypothetical protein atu3361 or agr_l_2924 SWALL:Q8UAL2 (EMBL:AE009266) (448 aa) fasta scores: E(): 5.1e-53, 42.42% id in 462 aa, and to Bacillus subtilis hypothetical protein yxeq or lp9I SWALL:YXEQ_BACSU (SWALL:P54956) (445 aa) fasta scores: E(): 3.3e-43, 40.5% id in 400 aa.
  
     0.773
fom1
Similar to Streptomyces wedmorensis phosphoenolpyruvate phosphomutase Fom1 SWALL:P96074 (EMBL:AB016934) (435 aa) fasta scores: E(): 6.1e-59, 54.26% id in 293 aa, and to Streptomyces hygroscopicus phosphoenolpyruvate phosphomutase BcpB SWALL:PEPM_STRHY (SWALL:P29247) (313 aa) fasta scores: E(): 2.7e-22, 35.39% id in 291 aa.
  
  
 0.676
ECA4117
Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta scores: E(): 4.4e-11, 30.13% id in 302 aa, and to Brucella melitensis citrate lyase beta chain bmeii1074 SWALL:Q8YB27 (EMBL:AE009739) (274 aa) fasta scores: E(): 1.3e-22, 40.71% id in 280 aa; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.633
gltA
Citrate synthase; Similar to Escherichia coli, and Escherichia coli O6 citrate synthase GltA or GluT or IcdB or b0720 or c0796 SWALL:CISY_ECOLI (SWALL:P00891) (427 aa) fasta scores: E(): 3.3e-160, 87.55% id in 426 aa.
  
  
 0.622
ECA4121
Citrate synthase; Similar to Escherichia coli, and Escherichia coli O6 citrate synthase GltA or GluT or IcdB or b0720 or c0796 SWALL:CISY_ECOLI (SWALL:P00891) (427 aa) fasta scores: E(): 2e-119, 63.91% id in 424 aa.
  
  
 0.622
ECA0611
Conserved hypothetical protein; Similar to Salmonella typhi putative DNA helicase sty4664 SWALL:Q8Z1C6 (EMBL:AL627283) (503 aa) fasta scores: E(): 1.4e-115, 59.24% id in 476 aa and to Proteus vulgaris helicase orf193 SWALL:Q8L286 (EMBL:AP004237) (491 aa) fasta scores: E(): 2.6e-64, 39.24% id in 474 aa.
  
     0.478
citE
Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta scores: E(): 1.3e-80, 72.56% id in 288 aa, and to Escherichia coli, and Escherichia coli O6 citrate lyase beta chain CitE or b0616 or c0706 SWALL:CILB_ECOLI (SWALL:P77770) (302 aa) fasta scores: E(): 2.7e-74, 65.17% id in 290 aa; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.473
fumA
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.445
ECA4501
Similar to Escherichia coli O157:H7 putative enzyme z4856 or ecs4331 SWALL:Q8X6M3 (EMBL:AE005571) (453 aa) fasta scores: E(): 3.5e-72, 46.3% id in 447 aa, and to Vibrio vulnificus acyl-coenzyme A synthetase vv10050 SWALL:Q8DG01 (EMBL:AE016797) (455 aa) fasta scores: E(): 9.7e-48, 37.86% id in 441 aa.
  
  
 0.403
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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