STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2970ABC-transporter ATP-binding protein; Similar to Corynebacterium efficiens putative amino acid ABC transporter ATP-binding protein ce1443 SWALL:BAC18253 (EMBL:AP005218) (254 aa) fasta scores: E(): 1.1e-43, 57.32% id in 239 aa, and to Streptomyces coelicolor ATP-binding protein atrc or sco5258 or 2sc7g11.20C SWALL:Q9F3K7 (EMBL:AL939123) (253 aa) fasta scores: E(): 1.6e-43, 55.02% id in 249 aa. (276 aa)    
Predicted Functional Partners:
ECA2968
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glutamine transport system permease protein glnp glnp or b0810 or c0895 or z1032 or ecs0888 or sf0761 SWALL:GLNP_ECOLI (SWALL:P10345) (219 aa) fasta scores: E(): 1.3e-22, 38.46% id in 221 aa, and to Bradyrhizobium japonicum ABC transporter permease protein blr8118 SWALL:BAC53383 (EMBL:AP005964) (220 aa) fasta scores: E(): 3.9e-29, 40.18% id in 219 aa.
 0.995
ECA2969
Similar to Bradyrhizobium japonicum ABC transporter permease protein blr8118 SWALL:BAC53383 (EMBL:AP005964) (220 aa) fasta scores: E(): 9.4e-32, 44.29% id in 219 aa, and to Bacillus halodurans ABC transporter bh1462 SWALL:Q9KCV7 (EMBL:AP001512) (218 aa) fasta scores: E(): 1.4e-28, 40.74% id in 216 aa.
 0.995
ECA2966
Putative extracellular solute-binding protein; Similar to Bradyrhizobium japonicum ABC transporter substrate-binding protein blr8117 SWALL:BAC53382 (EMBL:AP005964) (284 aa) fasta scores: E(): 1.5e-26, 34.84% id in 264 aa, and to Streptococcus pneumoniae ABC transporter substrate-binding protein-glutamine-binding protein GlnH or spr1251 SWALL:AAL00055 (EMBL:AE008497) (271 aa) fasta scores: E(): 3.2e-13, 28.93% id in 273 aa.
 
  0.950
ECA4194
Similar to Vibrio harveyi probable amino-acid ABC transporter permease protein PatM SWALL:PATM_VIBHA (SWALL:P52625) (223 aa) fasta scores: E(): 2.3e-36, 47.98% id in 223 aa, and to Bacillus subtilis probable amino-acid ABC transporter permease protein yxen or lp9F SWALL:YXEN_BACSU (SWALL:P54953) (224 aa) fasta scores: E(): 1.2e-45, 57.07% id in 219 aa.
 
 0.851
glnP
Glutamine transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glutamine transport system permease protein GlnP or b0810 or c0895 or z1032 or ecs0888 or sf0761 SWALL:GLNP_ECOLI (SWALL:P10345) (219 aa) fasta scores: E(): 1.9e-69, 84.01% id in 219 aa.
 
 0.850
ECA4479
Similar to Ralstonia solanacearum probable amino acid transmembrane ABC transporter protein rsp0933 or rs05400 SWALL:Q8XRC5 (EMBL:AL646081) (248 aa) fasta scores: E(): 2.3e-55, 60.26% id in 229 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4282 or agr_l_1163 SWALL:Q8U817 (EMBL:AE009356) (252 aa) fasta scores: E(): 1.1e-50, 56.38% id in 227 aa.
 
 0.839
ECA0855
Similar to Rhizobium sp. TAL1145 mimosine transporter permease MidB SWALL:Q9EYT1 (EMBL:AF312768) (234 aa) fasta scores: E(): 6.8e-38, 52.52% id in 198 aa, and to Rhizobium meliloti putative ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 1.8e-46, 46.2% id in 290 aa.
 
 0.835
ECA4480
Probable amino acid ABC transporter, permease protein; Similar to Escherichia coli, and Escherichia coli O6 glutamate/aspartate transport system permease protein GltJ or b0654 or c0738 SWALL:GLTJ_ECOLI (SWALL:P41074) (246 aa) fasta scores: E(): 2.8e-19, 30.94% id in 223 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4281 or agr_l_1164 SWALL:Q8U818 (EMBL:AE009356) (235 aa) fasta scores: E(): 9.3e-48, 57.01% id in 221 aa.
 
 0.833
ECA4468
Binding-protein-dependent transport system inner membrane component; Similar to Yersinia pestis ABC transporter permease ypo4110 or gltj or y4124 SWALL:AAM87666 (EMBL:AJ414160) (245 aa) fasta scores: E(): 4.7e-70, 75.72% id in 243 aa, and to Pseudomonas aeruginosa probable amino acid permease pa2203 SWALL:Q9I1R4 (EMBL:AE004646) (238 aa) fasta scores: E(): 5.6e-47, 62.88% id in 229 aa.
 
 0.821
gltK
Glutamate/aspartate transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamate/aspartate transport system permease protein GltK or b0653 or c0737 or z0803 or ecs0692 SWALL:GLTK_ECOLI (SWALL:P41075) (224 aa) fasta scores: E(): 2.2e-73, 84.75% id in 223 aa.
 
 0.818
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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