STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2976Similar to Pseudomonas fluorescens putative transcriptional regulator SWALL:AAN32873 (EMBL:AF461725) (238 aa) fasta scores: E(): 7.6e-57, 61.34% id in 238 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0448 SWALL:Q9I670 (EMBL:AE004482) (302 aa) fasta scores: E(): 2.4e-41, 39.86% id in 301 aa. Also similar to ECA1602 (96.026% id. in 302 aa overlap); Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
ECA2977
Similar to Pseudomonas fluorescens hypothetical protein SWALL:AAN32872 (EMBL:AF461725) (79 aa) fasta scores: E(): 1.6e-14, 59.42% id in 69 aa, and to Bradyrhizobium japonicum Blr3308 protein blr3308 SWALL:BAC48573 (EMBL:AP005947) (105 aa) fasta scores: E(): 0.04, 31.34% id in 67 aa.
 
     0.844
ECA2973
LysR-family transcriptional regulator; Similar to Rhizobium meliloti putative transcription regulator protein r02971 or smc03122 SWALL:Q92LQ9 (EMBL:AL591792) (315 aa) fasta scores: E(): 2.5e-28, 35.31% id in 286 aa, and to Brucella suis transcriptional regulator, LysR family bra0952 SWALL:AAN34123 (EMBL:AE014588) (304 aa) fasta scores: E(): 2e-27, 31.29% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.660
ECA2979
Probable hydrolase; Similar to Pseudomonas sp. WBC-3 methyl parathion hydrolase mpD SWALL:Q841S6 (EMBL:AY251554) (331 aa) fasta scores: E(): 2.6e-22, 31.57% id in 285 aa, and to Plesiomonas sp. DLL-1 methyl parathion degrading protein SWALL:Q93SP1 (EMBL:AY029773) (341 aa) fasta scores: E(): 2.6e-22, 31.57% id in 285 aa.
 
    0.659
ECA2642
Similar to Pseudomonas putida transcriptional regulator, LysR family pp4522 SWALL:AAN70096 (EMBL:AE016791) (297 aa) fasta scores: E(): 5.6e-24, 29.64% id in 280 aa, and to Rhizobium loti transcriptional regulator mlr6990 SWALL:Q987M7 (EMBL:AP003010) (299 aa) fasta scores: E(): 4.7e-18, 30.45% id in 266 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.651
ECA0916
LysR-family transcriptional regulator; Similar to Listeria innocua transcription activator of glutamate synthase operon GltC SWALL:Q92AS3 (EMBL:AL596170) (295 aa) fasta scores: E(): 8.3e-15, 25.25% id in 293 aa, and to Acinetobacter calcoaceticus ben and cat operon transcriptional regulator BenM SWALL:BENM_ACICA (SWALL:O68014) (304 aa) fasta scores: E(): 1.3e-11, 25% id in 272 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.646
ECA3843
Similar to Burkholderia cepacia putative transcriptional regulator CeoR SWALL:Q8VL17 (EMBL:AY008288) (334 aa) fasta scores: E(): 1e-47, 45.27% id in 296 aa, and to Salmonella typhi putative transcriptional regulator sty1386 SWALL:Q8Z7A3 (EMBL:AL627270) (301 aa) fasta scores: E(): 1.3e-47, 45.36% id in 302 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.645
sftR-2
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 6.9e-58, 50.82% id in 303 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein SdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 2.3e-29, 37.58% id in 314 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.642
ECA0737
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2534 SWALL:Q9I0V0 (EMBL:AE004681) (303 aa) fasta scores: E(): 9.2e-53, 51.16% id in 301 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.625
ECA4427
LysR-family transcriptional regulator; Similar to Agrobacterium tumefaciens regulatory protein NocR or atu6029 or agr_pti_70 SWALL:NOCR_AGRT5 (SWALL:Q00678) (300 aa) fasta scores: E(): 1.4e-28, 35.29% id in 289 aa, and to Rhizobium meliloti octopine catabolism/uptake operon regulatory protein OccR SWALL:OCCR_RHIME (SWALL:P72294) (297 aa) fasta scores: E(): 5.8e-23, 36.58% id in 287 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.624
ECA3376
LysR-family transcriptional regulator; Similar to Rhizobium loti transcription regulator mll3011 SWALL:Q98H66 (EMBL:AP003001) (292 aa) fasta scores: E(): 2.1e-49, 48.61% id in 288 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp3811 SWALL:Q88GB3 (EMBL:AE016788) (294 aa) fasta scores: E(): 1e-34, 41.15% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.617
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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