Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA2980Hypothetical protein; No significant database matches. (111 aa)    
Predicted Functional Partners:
rfbI
Similar to Yersinia pestis, and Yersinia pseudotuberculosis CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase AscD or RfbI or ypo3116 or y1067 SWALL:ASCD_YERPE (SWALL:P37911) (328 aa) fasta scores: E(): 2.8e-45, 45.7% id in 326 aa, and to Salmonella typhimurium RfbI protein or stm2093 SWALL:RFBI_SALTY (SWALL:P26395) (330 aa) fasta scores: E(): 1.1e-50, 46.01% id in 326 aa.
    
  0.667
ECA2981
Putative exported protein; Similar to Leptospira interrogans conserved hypothetical protein lb047 SWALL:AAN51606 (EMBL:AE011593) (440 aa) fasta scores: E(): 1.7e-05, 23.3% id in 339 aa, and to Shewanella oneidensis hypothetical protein so1002 SWALL:AAN54075 (EMBL:AE015544) (770 aa) fasta scores: E(): 5.4e-05, 25.16% id in 445 aa.
       0.562
emrE
Putative multidrug resistance protein; Similar to Escherichia coli emre protein EmrE or MvrC or Eb or b0543 SWALL:EMRE_ECOLI (SWALL:P23895) (110 aa) fasta scores: E(): 3.6e-30, 75.45% id in 110 aa, and to Shigella flexneri methylviologen resistance EmrE or sf1979.1 SWALL:AAN43529 (EMBL:AE015216) (110 aa) fasta scores: E(): 1.4e-30, 77.27% id in 110 aa.
  
    0.524
ECA2983
Hypothetical protein; No significant database matches.
       0.483
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 
 0.407
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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