STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrEPutative multidrug resistance protein; Similar to Escherichia coli emre protein EmrE or MvrC or Eb or b0543 SWALL:EMRE_ECOLI (SWALL:P23895) (110 aa) fasta scores: E(): 3.6e-30, 75.45% id in 110 aa, and to Shigella flexneri methylviologen resistance EmrE or sf1979.1 SWALL:AAN43529 (EMBL:AE015216) (110 aa) fasta scores: E(): 1.4e-30, 77.27% id in 110 aa. (110 aa)    
Predicted Functional Partners:
ECA2981
Putative exported protein; Similar to Leptospira interrogans conserved hypothetical protein lb047 SWALL:AAN51606 (EMBL:AE011593) (440 aa) fasta scores: E(): 1.7e-05, 23.3% id in 339 aa, and to Shewanella oneidensis hypothetical protein so1002 SWALL:AAN54075 (EMBL:AE015544) (770 aa) fasta scores: E(): 5.4e-05, 25.16% id in 445 aa.
       0.714
ECA2983
Hypothetical protein; No significant database matches.
       0.709
ECA2980
Hypothetical protein; No significant database matches.
  
    0.522
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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