STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2985Similar to Pseudomonas putida transcriptional regulator, ArsR family pp1253 SWALL:AAN66877 (EMBL:AE016778) (111 aa) fasta scores: E(): 1.1e-24, 65% id in 100 aa, and to Anabaena sp. transcriptional regulator alr1867 SWALL:Q8YVV6 (EMBL:AP003587) (112 aa) fasta scores: E(): 3.3e-16, 50.49% id in 101 aa. (113 aa)    
Predicted Functional Partners:
xenA
Similar to Pseudomonas putida xenobiotic reductase a XenA SWALL:Q9R9V9 (EMBL:AF154061) (363 aa) fasta scores: E(): 2.4e-114, 75.96% id in 362 aa, and to Xanthomonas campestris xenobiotic flavin oxidoreductase a frp or xcc1170 SWALL:Q8PBF2 (EMBL:AE012216) (366 aa) fasta scores: E(): 2.5e-104, 70.44% id in 362 aa.
 
     0.639
copA
Similar to Escherichia coli copper-transporting P-type ATPase CopA or b0484 SWALL:ATCU_ECOLI (SWALL:Q59385) (833 aa) fasta scores: E(): 4.8e-208, 71.37% id in 835 aa.
  
  
 0.585
mtnD1
Probable oxidase; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.
     
 0.555
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.486
ECA2987
Similar to Escherichia coli hypothetical protein yehs or b2124 SWALL:YEHS_ECOLI (SWALL:P33355) (156 aa) fasta scores: E(): 1.4e-37, 62.82% id in 156 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yehs or stm2157 or sty2387 SWALL:Q8XEY4 (EMBL:AE008796) (155 aa) fasta scores: E(): 1e-36, 64% id in 150 aa.
       0.405
ECA3565
TonB dependent receptor; Similar to Yersinia enterocolitica ferrichrome receptor FcuA precursor fcuA SWALL:FCUA_YEREN (SWALL:Q05202) (758 aa) fasta scores: E(): 2.8e-42, 29.09% id in 787 aa, and to Escherichia coli O6 hypothetical protein c0294 or c2518 SWALL:AAN80973 (EMBL:AE016755) (721 aa) fasta scores: E(): 1.5e-160, 57.22% id in 720 aa.
  
     0.400
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.