Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ECA2985Similar to Pseudomonas putida transcriptional regulator, ArsR family pp1253 SWALL:AAN66877 (EMBL:AE016778) (111 aa) fasta scores: E(): 1.1e-24, 65% id in 100 aa, and to Anabaena sp. transcriptional regulator alr1867 SWALL:Q8YVV6 (EMBL:AP003587) (112 aa) fasta scores: E(): 3.3e-16, 50.49% id in 101 aa. (113 aa)    
Predicted Functional Partners:
xenA
Similar to Pseudomonas putida xenobiotic reductase a XenA SWALL:Q9R9V9 (EMBL:AF154061) (363 aa) fasta scores: E(): 2.4e-114, 75.96% id in 362 aa, and to Xanthomonas campestris xenobiotic flavin oxidoreductase a frp or xcc1170 SWALL:Q8PBF2 (EMBL:AE012216) (366 aa) fasta scores: E(): 2.5e-104, 70.44% id in 362 aa.
 
     0.646
mtnD1
Probable oxidase; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.
       0.554
copA
Similar to Escherichia coli copper-transporting P-type ATPase CopA or b0484 SWALL:ATCU_ECOLI (SWALL:Q59385) (833 aa) fasta scores: E(): 4.8e-208, 71.37% id in 835 aa.
  
  
 0.489
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
   
 0.439
ECA2987
Similar to Escherichia coli hypothetical protein yehs or b2124 SWALL:YEHS_ECOLI (SWALL:P33355) (156 aa) fasta scores: E(): 1.4e-37, 62.82% id in 156 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yehs or stm2157 or sty2387 SWALL:Q8XEY4 (EMBL:AE008796) (155 aa) fasta scores: E(): 1e-36, 64% id in 150 aa.
       0.405
ECA3565
TonB dependent receptor; Similar to Yersinia enterocolitica ferrichrome receptor FcuA precursor fcuA SWALL:FCUA_YEREN (SWALL:Q05202) (758 aa) fasta scores: E(): 2.8e-42, 29.09% id in 787 aa, and to Escherichia coli O6 hypothetical protein c0294 or c2518 SWALL:AAN80973 (EMBL:AE016755) (721 aa) fasta scores: E(): 1.5e-160, 57.22% id in 720 aa.
  
     0.400
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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