STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2988Conserved hypothetical protein (partial); Similar to the C-terminal region of many including Salmonella typhimurium putative inner membrane protein stm4518 SWALL:Q8ZJZ4 (EMBL:AE008912) (171 aa) fasta scores: E(): 0.0011, 36.61% id in 71 aa, and to Escherichia coli, and Salmonella typhimurium ydga protein ydga or ygdB SWALL:Q9Z4C7 (EMBL:AB021078) (313 aa) fasta scores: E(): 6.5e-07, 49.25% id in 67 aa, and to Photorhabdus luminescens putative truncated transposase SWALL:Q937N5 (EMBL:AF346497) (79 aa) fasta scores: E(): 0.069, 36% id in 75 aa. (77 aa)    
Predicted Functional Partners:
mvpT
Putative plasmid protein; Similar to Shigella flexneri MvpT protein SWALL:CAC05863 (EMBL:AL391753) (75 aa) fasta scores: E(): 8e-18, 68.91% id in 74 aa, and to Salmonella dublin virulence-associated protein VagC SWALL:VAGC_SALDU (SWALL:Q05459) (76 aa) fasta scores: E(): 0.0048, 31.81% id in 66 aa.
  
     0.636
ECA2062
Putative phosphatase; Similar to Salmonella typhimurium putative phosphatase stm3595 SWALL:Q8ZLD5 (EMBL:AE008866) (423 aa) fasta scores: E(): 2.3e-84, 55.37% id in 437 aa.
  
     0.622
ECA2613
Similar to Bacteriophage P2 tail completion protein s S SWALL:VPS_BPP2 (SWALL:P36934) (150 aa) fasta scores: E(): 0.017, 24.02% id in 204 aa and to Bacteriophage phi CTX orf14 SWALL:Q9ZXL2 (EMBL:AB008550) (156 aa) fasta scores: E(): 1.7e-07, 32.02% id in 203 aa.
  
     0.547
ECA2618
Similar to Bacteriophage P2 tail protein Gpx SWALL:VPX_BPP2 (SWALL:P51772) (67 aa) fasta scores: E(): 2.8e-10, 54.54% id in 66 aa and Bacteriophage 186 orf23 SWALL:O80307 (EMBL:U32222) (67 aa) fasta scores: E(): 2.4e-10, 50% id in 66 aa.
  
     0.543
mcK
Putative plasmid-related protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.540
ECA0366
Similar to Escherichia coli O6 hypothetical protein c3274 SWALL:AAN81723 (EMBL:AE016765) (103 aa) fasta scores: E(): 2.1e-22, 55.34% id in 103 aa.
  
     0.526
mvpA
Putative plasmid protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.515
ECA2614
Similar to Bacteriophage P2 tail completion protein R SWALL:VPR_BPP2 (SWALL:P36933) (155 aa) fasta scores: E(): 9.1e-12, 37.31% id in 134 aa, and to Salmonella typhi putative phage tail protein sty3685 SWALL:Q8Z348 (EMBL:AL627279) (143 aa) fasta scores: E(): 7.3e-12, 38.16% id in 131 aa.
  
     0.499
ECA0969
Similar to Yersinia pestis putative tetr-family regulatory protein ypo3840 or y0390 SWALL:AAM83979 (EMBL:AJ414159) (228 aa) fasta scores: E(): 1.4e-33, 71.36% id in 213 aa, and to Rhizobium loti transcriptional regulator mll3386 SWALL:Q98GC7 (EMBL:AP003001) (219 aa) fasta scores: E(): 3.2e-30, 48.66% id in 187 aa.
  
     0.493
ECA3160
Similar to Salmonella typhimurium putative transcriptional regulator stm2195 SWALL:Q8ZNL4 (EMBL:AE008798) (129 aa) fasta scores: E(): 3.8e-14, 38.68% id in 137 aa, and to Salmonella typhi putative DNA-binding protein sty2429 SWALL:Q8Z5A0 (EMBL:AL627273) (129 aa) fasta scores: E(): 4.4e-14, 38.68% id in 137 aa.
  
     0.482
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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