Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ECA2996Bacteriophage tail fiber protein; Similar to Pectobacterium carotovorum subsp. carotovorum tail fiber SWALL:Q9KW53 (EMBL:AB045036) (632 aa) fasta scores: E(): 2.3e-64, 45.92% id in 577 aa, and to Salmonella typhi bacteriophage tail fiber protein sty1637 SWALL:Q8Z6S9 (EMBL:AL627270) (341 aa) fasta scores: E(): 3.1e-26, 47.36% id in 209 aa. (619 aa)    
Predicted Functional Partners:
ECA3736
Similar to Bacteriophage P2 baseplate assembly protein V SWALL:VPV_BPP2 (SWALL:P31340) (211 aa) fasta scores: E(): 3.6e-07, 28.27% id in 191 aa and Pectobacterium carotovorum subsp. carotovorum tail spike SWALL:Q9KW56 (EMBL:AB045036) (193 aa) fasta scores: E(): 5.4e-47, 64.46% id in 197 aa.
 
  
 0.872
ECA2773
Bacteriophage tail sheath protein (partial); Similar to the N-terminal regions of many including Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa, and to Pectobacterium carotovorum subsp. carotovorum tail sheath protein SWALL:Q9KW62 (EMBL:AB045036) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa.
 
  
 0.867
ECA3729
Similar to Bacteriophage P2 major tail sheath protein fI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 2.4e-19, 30.27% id in 403 aa and to Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 3.5e-154, 81.05% id in 475 aa.
 
  
 0.865
ECA3735
Putative bacteriophage protein; Similar to Bacteriophage P2 GpD SWALL:VPD_BPP2 (SWALL:P10312) (387 aa) fasta scores: E(): 7.1e-11, 24.45% id in 364 aa and to Salmonella typhi putative protein sty1632 SWALL:Q8Z6T4 (EMBL:AL627270) (384 aa) fasta scores: E(): 4.1e-106, 76.44% id in 382 aa.
 
  
 0.860
ECA3730
Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 4e-09, 28.65% id in 164 aa and to Erwinia carotovora tail core protein SWALL:Q9WXA0 (EMBL:AB017338) (174 aa) fasta scores: E(): 2.2e-60, 82.75% id in 174 aa.
 
  
 0.859
ECA3740
Similar to the N-terminus of Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 5.5, 29.29% id in 99 aa. Also hhighly similar to Erwinia carotovora tail fiber SWALL:Q9WXA4 (EMBL:AB017338) (182 aa) fasta scores: E(): 3.8e-31, 59.15% id in 142 aa.
 
  
 0.855
ECA3738
Similar to Bacteriophage P2 baseplate assembly protein w W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 0.0098, 36.78% id in 87 aa and Erwinia carotovora, and Pectobacterium carotovorum subsp. carotovorum baseplate SWALL:Q9WXA2 (EMBL:AB017338) (115 aa) fasta scores: E(): 7.1e-37, 75.65% id in 115 aa.
 
  
 0.853
ECA3739
Similar to Bacteriophage P2 baseplate assembly protein J SWALL:VPJ_BPP2 (SWALL:P51767) (302 aa) fasta scores: E(): 3.7e-13, 36.89% id in 187 aa and Pectobacterium carotovorum subsp. carotovorum baseplate SWALL:Q9KW55 (EMBL:AB045036) (367 aa) fasta scores: E(): 7.3e-87, 65.39% id in 367 aa.
 
  
 0.848
ECA2601
Similar to Bacteriophage P2 major tail sheath protein FI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 3.9e-74, 50% id in 392 aa, and to Escherichia coli O157:H7 putative tail sheath protein of prophage cp-933t z2991 or ecs2645 SWALL:Q8XBE2 (EMBL:AE005413) (394 aa) fasta scores: E(): 1.2e-109, 69.19% id in 396 aa.
 
  
 0.842
ECA2610
Similar to Bacteriophage P2 baseplate assembly protein GpJ SWALL:VPJ_BPP2 (SWALL:P51767) (302 aa) fasta scores: E(): 1.8e-56, 54.48% id in 301 aa and to Bacteriophage 186 GpL SWALL:Q37840 (EMBL:U32222) (302 aa) fasta scores: E(): 3.2e-57, 54.81% id in 301 aa.
 
  
 0.837
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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