STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydA2Cytochrome d ubiquinol oxidase subunit I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome D ubiquinol oxidase subunit I CydA or Cyd-1 or b0733 or c0811 or sf0564 SWALL:CYDA_ECOLI (SWALL:P11026) (522 aa) fasta scores: E(): 1.2e-172, 80.15% id in 524 aa. (525 aa)    
Predicted Functional Partners:
cydB2
Cytochrome D ubiquinol oxidase subunit II; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or b0734 or c0812 or z0901 or ecs0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 1.3e-106, 69.12% id in 379 aa.
 
 0.991
cydB1
Cytochrome D ubiquinol oxidase subunit II; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or b0734 or c0812 or z0901 or ecs0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 4.4e-123, 80.21% id in 379 aa.
 
 0.967
cydA1
Cytochrome D ubiquinol oxidase subunit I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome D ubiquinol oxidase subunit I CydA or Cyd-1 or b0733 or c0811 or sf0564 SWALL:CYDA_ECOLI (SWALL:P11026) (522 aa) fasta scores: E(): 2.3e-178, 83.9% id in 522 aa.
  
  
 
0.900
cydD
Similar to Escherichia coli transport ATP-binding protein CydD or HtrD or b0887 SWALL:CYDD_ECOLI (SWALL:P29018) (588 aa) fasta scores: E(): 6.8e-147, 68.02% id in 588 aa.
 
  
 0.892
cydC
Similar to Escherichia coli transport ATP-binding protein CydC or MdrA or MdrH or SurB or b0886 SWALL:CYDC_ECOLI (SWALL:P23886) (573 aa) fasta scores: E(): 7.8e-141, 65.67% id in 571 aa.
 
  
 0.810
ECA1367
Putative membrane protein; Similar to Erwinia chrysanthemi YbgT protein SWALL:Q937K9 (EMBL:AJ297885) (38 aa) fasta scores: E(): 3.5e-11, 76.31% id in 38 aa, and to Escherichia coli protein YbgT or b0734.1 SWALL:YBGT_ECOLI (SWALL:P56100) (37 aa) fasta scores: E(): 2.5e-10, 75% id in 36 aa.
  
 
 0.721
ECA0947
Putative membrane protein; Similar to Pasteurella multocida hypothetical protein pm0404 SWALL:Q9CNM3 (EMBL:AE006076) (287 aa) fasta scores: E(): 4.7e-57, 54.31% id in 278 aa, and to Neisseria meningitidis putative integral membrane protein nma1777 SWALL:Q9JTH3 (EMBL:AL162757) (287 aa) fasta scores: E(): 3.8e-55, 52.43% id in 267 aa.
  
  
 0.614
nuoH
NADH-quinone oxidoreductase chain H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
     
 0.586
nuoA
NADH-quinone oxidoreductase chain A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.
     
 0.580
ECA1368
Putative membrane protein; Similar to Erwinia chrysanthemi YbgE protein SWALL:Q937K8 (EMBL:AJ297885) (97 aa) fasta scores: E(): 1.7e-31, 79.16% id in 96 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein YbgE or b0735 or c0814 or z0903 or ecs0770 or sf0562 SWALL:YBGE_ECOLI (SWALL:P37343) (97 aa) fasta scores: E(): 4.2e-26, 63.54% id in 96 aa.
  
    0.568
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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