Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA3000Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yidh yidh or b3676 or c4600 or z5171 or ecs4617 or sf3786 SWALL:YIDH_ECOLI (SWALL:P31445) (115 aa) fasta scores: E(): 1e-17, 51.4% id in 107 aa, and to Salmonella typhimurium putative inner membrane protein yidh or stm3805 SWALL:Q8ZL05 (EMBL:AE008877) (115 aa) fasta scores: E(): 1.9e-17, 50.46% id in 107 aa. (121 aa)    
Predicted Functional Partners:
ECA3001
Putative membrane protein; Similar to Mycobacterium tuberculosis hypothetical protein rv2273 or mt2334 or mtcy339.37C SWALL:YM73_MYCTU (SWALL:Q50690) (109 aa) fasta scores: E(): 0.017, 33.66% id in 101 aa, and to Corynebacterium glutamicum hypothetical membrane protein Cgl0104 SWALL:Q8NU43 (EMBL:AP005274) (105 aa) fasta scores: E(): 0.32, 22.68% id in 97 aa.
       0.804
ECA0065
Similar to Pseudomonas aeruginosa hypothetical protein Pa2033 SWALL:Q9I282 (EMBL:AE004629) (302 aa) fasta scores: E(): 7.3e-48, 46.8% id in 297 aa, and to Corynebacterium glutamicum siderophore-interacting protein cgl0665 SWALL:Q8NSK6 (EMBL:AP005276) (299 aa) fasta scores: E(): 1.9e-29, 37.32% id in 292 aa, and to Escherichia coli hypothetical protein YqjH SWALL:YQJH_ECOLI (SWALL:Q46871) (254 aa) fasta scores: E(): 0.0064, 28.05% id in 303 aa.
  
     0.495
cydB2
Cytochrome D ubiquinol oxidase subunit II; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or b0734 or c0812 or z0901 or ecs0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 1.3e-106, 69.12% id in 379 aa.
       0.412
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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